View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20513_low_7 (Length: 241)
Name: NF20513_low_7
Description: NF20513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20513_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 3862593 - 3862387
Alignment:
| Q |
19 |
aacctaagtgatataaacaatgttttgtgattggttctcttcnnnnnnnnnnngttttgtgattggttaagaatgtaaaaaataccatccaaagtatgta |
118 |
Q |
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| T |
3862593 |
aacctaagtgatataaacaatgttttgtgattggttctcttcaaaaaaaaaaagttttgtgattggttaagaatgtaaaaaataccatccaaagtatgta |
3862494 |
T |
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| Q |
119 |
aagtaaaacacgggaccaaaatttgaacttaaaaataagggtcataaatacattaatctttgtaatatataaagtaaacatggtttctttaatcgtatct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3862493 |
aagtaaaacacgggaccaaaatttgaacttaaaaataagggtcataaatacattaatctttgtaa--tataaagtaaacatggtttctttaatcgtatct |
3862396 |
T |
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| Q |
219 |
caagttcat |
227 |
Q |
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|||| |||| |
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| T |
3862395 |
caaggtcat |
3862387 |
T |
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