View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20514_high_10 (Length: 483)
Name: NF20514_high_10
Description: NF20514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20514_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 5630770 - 5631237
Alignment:
| Q |
1 |
atgtcatgttagtttgtagagtaagaacaatttgnnnnnnngtttttgaaatgaaattttcagtcatgattctaaattgcagttgtggttacaatgtgaa |
100 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5630770 |
atgtcatgttagtttgtagagtaagaaaaatttgaaaaaaagtttttgaaatgaaattttcagtcatgattctaaattgcagttgtggttacaatgtgaa |
5630869 |
T |
|
| Q |
101 |
ccttgttattgcattaaaatgcgagtaaatgtggccgattcagccgaaattgtagctgtgctgttgttgcagagacatctaaaacctttatattgcggca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5630870 |
ccttgttattgcattaaaatgcgagtaaatgtggccgattcagccgaaattgtagctgtgctgttgttgcagagacatctaaaacctttatattgcggca |
5630969 |
T |
|
| Q |
201 |
acaattgcagttgcggagcacaatgtagaactgtgttgtgaatcggtagtcattttaatctagggttagttaaaactcaggtgttaacatgttagtccag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5630970 |
acaattgcagttgcggagcacaatgtagaactgtgttgtgaatcggtagtcattttagtctagggttagttaaaactcaggtgttaacatgttagtccag |
5631069 |
T |
|
| Q |
301 |
ggttagttaactatgagcatcaaatgctacttaaacggtaatgtgtggaccaatataacagatgaattatggtttacatttggcatagtatcggttaaga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5631070 |
ggttagttaactatgagcatcaaatgctacttaaacggtaatgtgtggaccaatataacagatgaattatggtttacatttggcatagtatcggttaaga |
5631169 |
T |
|
| Q |
401 |
acctgataggagagcattcattaagaaggtccttgtgaaaaagaatagaaaggaaagtagggaggaaa |
468 |
Q |
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| T |
5631170 |
acctgataggagagcattcattaagaaggtccttgtgaaaaagaatagaaaggaaagtagggaggaaa |
5631237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 465
Target Start/End: Complemental strand, 5998044 - 5997976
Alignment:
| Q |
394 |
gttaagaacctgataggagagcattcattaagaaggtccttgtgaaaaagaatagaaaggaaagtagggagg |
465 |
Q |
| |
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| T |
5998044 |
gttaagaaccatataggagagcattcatt---aaggtctatgtgagaaagagtagaaaggaaagtaaggagg |
5997976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 21758884 - 21758844
Alignment:
| Q |
60 |
tcagtcatgattctaaattgcagttgtggttacaatgtgaa |
100 |
Q |
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|||| |||| |||||||||||||||||||||||| |||||| |
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| T |
21758884 |
tcagccatggttctaaattgcagttgtggttacattgtgaa |
21758844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 9928373 - 9928435
Alignment:
| Q |
162 |
tgttgttgcagagacatctaaaacctttatattgcggcaacaattgcagttgcggagcacaat |
224 |
Q |
| |
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|||||||||||||||||||||||| |||| ||||||| ||||||||||||| ||| |||||| |
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| T |
9928373 |
tgttgttgcagagacatctaaaacttttacattgcggacacaattgcagttgtggaacacaat |
9928435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 16950881 - 16950828
Alignment:
| Q |
171 |
agagacatctaaaacctttatattgcggcaacaattgcagttgcggagcacaat |
224 |
Q |
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| T |
16950881 |
agagacctctaaaactgttatattgcggccacaattgcagttgcggaccacaat |
16950828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 15418318 - 15418374
Alignment:
| Q |
176 |
catctaaaacctttatattgcggcaacaattgcagttgcggagcacaatgtagaact |
232 |
Q |
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| T |
15418318 |
catctaaaatctttatattgcggccacaattgcagttgtagaccacaatttagaact |
15418374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 32464730 - 32464772
Alignment:
| Q |
70 |
ttctaaattgcagttgtggttacaatgtgaaccttgttattgc |
112 |
Q |
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| T |
32464730 |
ttctaaattgctgttatggttacaatgtgaaccttgatattgc |
32464772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 24617209 - 24617173
Alignment:
| Q |
162 |
tgttgttgcagagacatctaaaacctttatattgcgg |
198 |
Q |
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||||||||||||||| | ||||||||||||||||||| |
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| T |
24617209 |
tgttgttgcagagacctttaaaacctttatattgcgg |
24617173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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