View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20514_high_11 (Length: 451)
Name: NF20514_high_11
Description: NF20514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20514_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 10 - 433
Target Start/End: Original strand, 20990365 - 20990792
Alignment:
| Q |
10 |
gcacagaatccacgaatgagaaaatcatagctcgttgaaatcggaatgttggatttctttagcattatgttcataagatgaactgccttctttaatcttc |
109 |
Q |
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| T |
20990365 |
gcacagaatccatgaatgagaaaatcatagctcgttgaaatcggaatgttggatttctttagcattatgttcataagatgaactgccttctttaatcttc |
20990464 |
T |
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| Q |
110 |
caaactcacaaaaacgcttaatcaagtaattgtaatcaatattatcgggagttagagattctactttgatcctatccaaaaaacattccgcattttccac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
20990465 |
caaactcacaaaaacgcttaatcaagtaattgtaatcaatattatcgggagttagagattcttctttcatcctatccaaaaaacattccgcattttccac |
20990564 |
T |
|
| Q |
210 |
aaaaccaagggaaagaaggctttccatgattcttgtttggatgagagaatcatgtttccatcctctatatcccatttctcgactcaattccacagctttt |
309 |
Q |
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| T |
20990565 |
aaaaccaagggaaagaaggctttccatgattcttgtttggatgagagaatcatgtttccatcctctatatcccatttctcgactcaattccacagctttt |
20990664 |
T |
|
| Q |
310 |
tgtagttcgccgacatcacacagactgcttatta----ccttaagcttcggtcacttggtttgattccctttgaaatcatggtagtaagatgatgcaaag |
405 |
Q |
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| T |
20990665 |
tgtagtttgccgacatcacacaggctgcttattaccttccttaagcttcggtcacttggtttgattccttttgaaatcatggtagtaagatgatgcaaag |
20990764 |
T |
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| Q |
406 |
aactggacaaatccttacattgcaagaa |
433 |
Q |
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| T |
20990765 |
aactggacaaatccttacattgcaagaa |
20990792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 8 - 433
Target Start/End: Original strand, 21001631 - 21002060
Alignment:
| Q |
8 |
gagcacagaatccacgaatgagaaaatcatagctcgttgaaatcggaatgttggatttctttagcattatgttcataagatgaactgccttctttaatct |
107 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21001631 |
gagcacagaatccataaatgagaaaatcatagctcgttgaaataggaatgttggatttctttagcattatgttcataagatgaaccgccttctttaatct |
21001730 |
T |
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| Q |
108 |
tccaaactcacaaaaacgcttaatcaagtaattgtaatcaatattatcgggagttagagattctactttgatcctatccaaaaaacattccgcattttcc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||| |
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| T |
21001731 |
tccaaactcacaaaaacgcttaatcaagtaattgtaatcaatattatcgggagttagagattcttcttccatcctgtccaaaaaacattctgcattttcc |
21001830 |
T |
|
| Q |
208 |
acaaaaccaagggaaagaaggctttccatgattcttgtttggatgagagaatcatgtttccatcctctatatcccatttctcgactcaattccacagctt |
307 |
Q |
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| T |
21001831 |
ataaaaccacgggaaagaaggctttccacaattcttgtttggatgagagaatcatgtatccatcctctaaatcccatccctcgactcaattccatagctt |
21001930 |
T |
|
| Q |
308 |
tttgtagttcgccgacatcacacagactgcttattacctt----aagcttcggtcacttggtttgattccctttgaaatcatggtagtaagatgatgcaa |
403 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||||| | |||||||||||||||||||||||||| |||||| |
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| T |
21001931 |
tttgtagctcgccgacatcacacagactgcttattaccttcctcaagctgcggtcactcggttttagtccctttgaaatcatggtagtaagataatgcaa |
21002030 |
T |
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| Q |
404 |
agaactggacaaatccttacattgcaagaa |
433 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
21002031 |
agaactggacaaatccttacattgcaagaa |
21002060 |
T |
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