View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20514_high_15 (Length: 332)

Name: NF20514_high_15
Description: NF20514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20514_high_15
NF20514_high_15
[»] chr1 (4 HSPs)
chr1 (24-161)||(25579689-25579826)
chr1 (183-316)||(25579558-25579691)
chr1 (279-326)||(23393651-23393698)
chr1 (259-316)||(1836516-1836573)
[»] chr8 (1 HSPs)
chr8 (265-318)||(7948383-7948436)
[»] chr4 (1 HSPs)
chr4 (279-316)||(46206590-46206627)
[»] chr7 (1 HSPs)
chr7 (278-318)||(40706811-40706851)
[»] chr3 (1 HSPs)
chr3 (280-316)||(45118653-45118689)


Alignment Details
Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 25579826 - 25579689
Alignment:
Q  24 tcggcatcataaaatcataacccttccctaccttccttttcaaaactactataccaaaacacagggtcgaaaaaaggaacatcaatgcattaaaccagcc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25579826 tcggcatcataaaatcataacccttccctaccttccttttcaaaactactataccaaaacacagggtcgaaaaaaggaacatcaatgcattaaaccagcc 25579727  T
Q  124 atcaatgcgagtaaagtcctagaattgcagggtgatac 161  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25579726 atcaatgcgagtaaagtcctagaattgcagggtgatac 25579689  T

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Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 183 - 316
Target Start/End: Complemental strand, 25579691 - 25579558
Alignment:
Q  183 tacacatgataatggtaattcatgatatcagttagtgtaatattcatctttacttcttgttttttaatcaatgagatgtctaggattcgaatcataaccc 282  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25579691 tacacatgataatggtaattcatgatatcagttggtgtaatattcatctttacttcttgttttttaatcaatgagatgtctagggttcgaatcataaccc 25579592  T
Q  283 ctgcatatataatgtaatgtccctagcaactgag 316  Q
    |||||||||||||||||||| |||||||||||||    
T  25579591 ctgcatatataatgtaatgtacctagcaactgag 25579558  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 326
Target Start/End: Complemental strand, 23393698 - 23393651
Alignment:
Q  279 acccctgcatatataatgtaatgtccctagcaactgagttcatctcac 326  Q
    ||||||||||||| ||||| || |||||| ||||||||||||||||||    
T  23393698 acccctgcatataaaatgtgatatccctaccaactgagttcatctcac 23393651  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 1836573 - 1836516
Alignment:
Q  259 tgtctaggattcgaatcataacccctgcatatataatgtaatgtccctagcaactgag 316  Q
    |||||||| |||||||| | |||||||||||||  ||||||| |||||| ||||||||    
T  1836573 tgtctagggttcgaatcttgacccctgcatataatatgtaatatccctaccaactgag 1836516  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 318
Target Start/End: Complemental strand, 7948436 - 7948383
Alignment:
Q  265 ggattcgaatcataacccctgcatatataatgtaatgtccctagcaactgagtt 318  Q
    ||||||||| |  ||||||||||||||| |||||||||| ||| ||||||||||    
T  7948436 ggattcgaaccccaacccctgcatatattatgtaatgtctctatcaactgagtt 7948383  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 316
Target Start/End: Complemental strand, 46206627 - 46206590
Alignment:
Q  279 acccctgcatatataatgtaatgtccctagcaactgag 316  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  46206627 acccctgcatatataatgcaatgtccctaccaactgag 46206590  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 40706851 - 40706811
Alignment:
Q  278 aacccctgcatatataatgtaatgtccctagcaactgagtt 318  Q
    ||||||| |||||||||||||||||||||| ||| ||||||    
T  40706851 aacccctacatatataatgtaatgtccctaccaattgagtt 40706811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 45118689 - 45118653
Alignment:
Q  280 cccctgcatatataatgtaatgtccctagcaactgag 316  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  45118689 cccctgcatatataatgcaatgtccctaccaactgag 45118653  T

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