View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20514_high_16 (Length: 322)
Name: NF20514_high_16
Description: NF20514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20514_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 310
Target Start/End: Original strand, 28331654 - 28331943
Alignment:
| Q |
20 |
ctagttttaatgtcatgattggtccataggtttttgagagttttgtaagtgccttgtgtggatttttgccaagttctaagatgtttccaattatgggaaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28331654 |
ctagttttaatgtcatgattggtccataggtttttgagagttttgtgagtgccttgtgtgggtttttgccaagttctaagatgtttccaattatgggaaa |
28331753 |
T |
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| Q |
120 |
tgggtttggccctggtggaagcttagtggaattttgggtttgtttaacttttctaagaataaagatgagaatgcttgcacttgcaaaggtaaccactagt |
219 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28331754 |
tgggtttggccctggtggaagcttggtggaattttgggtttgtttaacttttctaataataaagatgagaatgcttgcacttgcaaaggtaaccactagt |
28331853 |
T |
|
| Q |
220 |
agaagtgtttggtggttcatggctattttgtttttgagggaggtggtttatatcttcatcgcttttcccctttccattggttatatatatt |
310 |
Q |
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| T |
28331854 |
agaagtgtttggtggttcatggctattttgtttttgagggaggtagtttatatctt-atcgcttttgccctttccattggttatatatatt |
28331943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 28321175 - 28321395
Alignment:
| Q |
20 |
ctagttttaatgtcatgattggtccataggtttttgagagttttgtaagtgccttgtgtggatttttgccaagttctaagatgtttccaattatgggaaa |
119 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28321175 |
ctagttttaatgtcatgattggtccatagatttttgagagttttgttaatgccttgtgtggatttttgccaagttctaagatgtttccaatgatgggaag |
28321274 |
T |
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| Q |
120 |
tgggtttggccctggtggaagcttagtggaattttgggtttgtttaacttttctaagaataaagatgagaatgcttgcacttgcaaaggtaaccactagt |
219 |
Q |
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| T |
28321275 |
tggctttggccctggtggaagtttagtagaattttgggtttggtttgattttctaagaatgaagatgagaatggttgcacttacaaaggaaatcactagt |
28321374 |
T |
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| Q |
220 |
agaagtgtttggtggttcatg |
240 |
Q |
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||||||||||| |||| |||| |
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| T |
28321375 |
agaagtgtttgatggtccatg |
28321395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 28297113 - 28297325
Alignment:
| Q |
20 |
ctagttttaatgtcatgattggtccataggtttttgagagttttgtaagtgccttgtgtggatttttgccaagttctaagatgtttccaattatgggaaa |
119 |
Q |
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||||||||| ||||||||||||||||||| ||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||| || ||||||| |
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| T |
28297113 |
ctagttttagtgtcatgattggtccatagttttgtgagagttttgtgagtgccttatgtgggtttttgccaagttctaagatgtttcctatgatgggaag |
28297212 |
T |
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| Q |
120 |
tgggtttggccctggtggaagcttagtggaattttgggtttgtttaacttttctaagaataaagatgagaatgcttgcacttgcaaaggtaaccactagt |
219 |
Q |
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||||| ||||||||||||||| ||||| |||||||||||||| | | |||||||||||| |||||||||||| ||| || | |||||| ||||||| |
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| T |
28297213 |
tgggtatggccctggtggaagtttagtagaattttgggtttggattaattttctaagaatgaagatgagaatggttgtacacaaagaggtaatcactagt |
28297312 |
T |
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| Q |
220 |
agaagtgtttggt |
232 |
Q |
| |
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||||||||||||| |
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| T |
28297313 |
agaagtgtttggt |
28297325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 28288100 - 28287912
Alignment:
| Q |
20 |
ctagttttaatgtcatgattggtccataggtttttgagagttttgtaagtgccttgtgtggatttttgccaagttctaagatgtttccaattatgggaaa |
119 |
Q |
| |
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||||||||| |||||| |||||||||||| | |||||||| ||||| |||| | ||||||| ||||||||||||| |||||||||||| || ||||||| |
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| T |
28288100 |
ctagttttagtgtcataattggtccatagatgtttgagagatttgtgagtgtcctgtgtgggtttttgccaagttgtaagatgtttcctatgatgggaag |
28288001 |
T |
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| Q |
120 |
tgggtttggccctggtggaagcttagtggaattttgggtttgtttaacttttctaagaataaagatgagaatgcttgcacttgcaaagg |
208 |
Q |
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||| ||||||||||||||||| || || |||||||| ||||| || | |||||||||||| | |||||| |||||||||||| |||||| |
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| T |
28288000 |
tggctttggccctggtggaagttttgtagaattttgagtttggtttaattttctaagaatgaggatgaggatgcttgcacttacaaagg |
28287912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 28310601 - 28310813
Alignment:
| Q |
20 |
ctagttttaatgtcatgattggtccataggtttttgagagttttgtaagtgccttgtgtggatttttgccaagttctaagatgtttccaattatgggaaa |
119 |
Q |
| |
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||||||||| |||||| |||||||||||| | |||||||| ||||| |||| | ||||||||||||||||||||| |||||||||||| || ||||||| |
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| T |
28310601 |
ctagttttagtgtcataattggtccatagatgtttgagagatttgtgagtgtcctgtgtggatttttgccaagttgtaagatgtttcctatgatgggaag |
28310700 |
T |
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| Q |
120 |
tgggtttggccctggtggaagcttagtggaattttgggtttgtttaacttttctaagaataaagatgagaatgcttgcacttgcaaaggtaaccactagt |
219 |
Q |
| |
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||| ||||||||||||||||| || || |||||||| ||||| || | |||| ||| ||| |||||||||||||| |||| | |||||| ||| ||| |
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| T |
28310701 |
tggttttggccctggtggaagttttgtagaattttgagtttggtttaattttttaaaaatgaagatgagaatgctcgcacacaaagaggtaatcaccagt |
28310800 |
T |
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| Q |
220 |
agaagtgtttggt |
232 |
Q |
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||||||||||||| |
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| T |
28310801 |
agaagtgtttggt |
28310813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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