View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20514_high_17 (Length: 318)
Name: NF20514_high_17
Description: NF20514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20514_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 5847801 - 5848089
Alignment:
| Q |
18 |
agaccccaccgagaaaggttatatgtagtcggaatgagattatgaagtatataccaagcaaagaaatttatttttaaaggaagcgccttatgtcaaatta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5847801 |
agaccccaccgagaaaggttatatgtagttggaatgagattatgaagtatataccaagcaaagagatttatttttaaaggaagcgccttatgtcaaatta |
5847900 |
T |
|
| Q |
118 |
tatcgggagattcaagaatagttacatttttcaaatccgtcaagtagtgataagctcttttggctgcannnnnnngtgataaatgtaaatttcattgtca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| |
|
|
| T |
5847901 |
tatcgggagattcaagaatagttacatttttcaaatccgtcaagtagtgataagctcttttgactgcatttttttgtgatgaatgtaaatttcattgtca |
5848000 |
T |
|
| Q |
218 |
cgtgtcttccactccagcatacaacacaatgttatttaacaaaggacaacaaggtcccctatctactcctcctcccacatgtaaagtat |
306 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5848001 |
catgtcttccactccaacatacaacacaatgttatttaacaaagcactacacggtcccctatctactcctcctcccacatgtaaagtat |
5848089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University