View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20514_high_2 (Length: 631)
Name: NF20514_high_2
Description: NF20514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20514_high_2 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 30 - 516
Target Start/End: Original strand, 81167 - 81653
Alignment:
| Q |
30 |
cacaaacgcgctagatataatactaatattgactcgtaaacacttataataaaattgattatatgcaatcacatgtagcggtatcagatgctagttcatg |
129 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
81167 |
cacaaacgcgctagatataatactaacactgactcgtaaacatttataataaaattgattatatgtaatcacatgtagcggtgtcagatgctagttcatg |
81266 |
T |
|
| Q |
130 |
tttgacacaaaatacataatctatccgaagagggcattgcaaagaggaattataggcaaccgttctaatcaaggtggtgaatatacccttttgattcctt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
81267 |
tttgacacaaaatacataatctatccgaagagggcattgcaaagaggaattataggcaaccgttctaatcaaggtggtgaatatacccttttgattcctt |
81366 |
T |
|
| Q |
230 |
cagaagttcttattattagaactaattttagnnnnnnnnnnnnnnnnnngatgccttccctgtgctgtatgggaaagtgggaagtggttacaaaactata |
329 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
81367 |
cagaagttcttattattagaactaattttagaaaagaaaaaaagaaaaagatgccttccctgtgctgtatgggaaagtgggaggtggttacaaaactata |
81466 |
T |
|
| Q |
330 |
agtatgtaacaaattcccattatgagnnnnnnnnnnnnnnnnnnnnnngtacattcaaatgtaaaatgtttcggtgtgttcctnnnnnnnnngtaaaatg |
429 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
81467 |
agtatgtaacaaattcccattatgagtttttcttcttttttaacttttgtacattcaaatgtaaaatgtttcggtgtgttcctaaaaaaaaagtaaaatg |
81566 |
T |
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| Q |
430 |
tttgttgtgtgtttttagatcagtacttgtcaaaatatgattttgaataaaatttgattaacttacaatgaaggttaaagtaaaaca |
516 |
Q |
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| T |
81567 |
tttgttgtgtgtttttagatcagtacttgtcaaaatatgattttgaataaaatttgattaacttacaatgaaggttaaagtaaaaca |
81653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 30 - 516
Target Start/End: Complemental strand, 40885117 - 40884631
Alignment:
| Q |
30 |
cacaaacgcgctagatataatactaatattgactcgtaaacacttataataaaattgattatatgcaatcacatgtagcggtatcagatgctagttcatg |
129 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
40885117 |
cacaaacgcgctagatataatactaacactgactcgtaaacatttataataaaattgattatatgtaatcacatgtagcggtgtcagatgctagttcatg |
40885018 |
T |
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| Q |
130 |
tttgacacaaaatacataatctatccgaagagggcattgcaaagaggaattataggcaaccgttctaatcaaggtggtgaatatacccttttgattcctt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40885017 |
tttgacacaaaatacataatctatccgaagagggcattgcaaagaggaattataggcaaccgttctaatcaaggtggtgaatatacccttttgattcctt |
40884918 |
T |
|
| Q |
230 |
cagaagttcttattattagaactaattttagnnnnnnnnnnnnnnnnnngatgccttccctgtgctgtatgggaaagtgggaagtggttacaaaactata |
329 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40884917 |
cagaagttcttattattagaactaattttagaaaagaaaaaaagaaaaagatgccttccctgtgctgtatgggaaagtgggaggtggttacaaaactata |
40884818 |
T |
|
| Q |
330 |
agtatgtaacaaattcccattatgagnnnnnnnnnnnnnnnnnnnnnngtacattcaaatgtaaaatgtttcggtgtgttcctnnnnnnnnngtaaaatg |
429 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40884817 |
agtatgtaacaaattcccattatgagtttttcttcttttttaacttttgtacattcaaatgtaaaatgtttcggtgtgttcctaaaaaaaaagtaaaatg |
40884718 |
T |
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| Q |
430 |
tttgttgtgtgtttttagatcagtacttgtcaaaatatgattttgaataaaatttgattaacttacaatgaaggttaaagtaaaaca |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40884717 |
tttgttgtgtgtttttagatcagtacttgtcaaaatatgattttgaataaaatttgattaacttacaatgaaggttaaagtaaaaca |
40884631 |
T |
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