View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20514_high_20 (Length: 294)
Name: NF20514_high_20
Description: NF20514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20514_high_20 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 12 - 294
Target Start/End: Complemental strand, 4364335 - 4364053
Alignment:
| Q |
12 |
atcatcagagtcaatcttctgagaatctagaagcaaagcaattatacaggtcattaagaaaacaaattcagtactttcccaataggttgatgaaaataaa |
111 |
Q |
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| T |
4364335 |
atcatcagagtcaatcttctgagaatctagaagcaaagcaattatacaggtcattaagaaaacaaattcagtactttcccaataggttgatgaaaatgaa |
4364236 |
T |
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| Q |
112 |
gtggacaataatattttgcatgccaagaccctttgggtgcttgatagatttgtgtccaaccatgagaaaagtttaagcaacatgagcacaagctgaaaaa |
211 |
Q |
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| T |
4364235 |
gtggacaataatattttgcatactaagaccctttgggtgcttgatagatttgtgtccaaccatgagaaaagtttaagcaacatgagcacaaggtgaaaaa |
4364136 |
T |
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| Q |
212 |
actgcctacaaagaagttttatttacttataggaaccgagacacaacgtgcaattgcatcgatctttgatgttaaggaaaact |
294 |
Q |
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| T |
4364135 |
actgcctacaaagaagttttatttacttataggaaccgagacacaacgtgcaatttcatcgatctttgatgttaaggaaaact |
4364053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 216
Target Start/End: Complemental strand, 4347915 - 4347751
Alignment:
| Q |
42 |
aagcaaagcaattatacaggtcattaagaaaacaaattcagtactttcccaataggttgatgaaaataaagtggacaataatattttgcatgccaagacc |
141 |
Q |
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| T |
4347915 |
aagcaaagcaattacacaggtcattaagaaaacaaatgcagcactcccccaataggatgatgaaaatgaattg-------------tgaatgccaggact |
4347829 |
T |
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| Q |
142 |
ctttgggtgcttgatagatttgtgtccaaccatgagaaaagtttaagc---aacatgagcacaagctgaaaaaactgc |
216 |
Q |
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| T |
4347828 |
ctttgagtgcttgatagaattgtgtccaatcatgagaaaagtttaagcaacaacaagagcacatgctgaaaaaactgc |
4347751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 185
Target Start/End: Original strand, 39250424 - 39250553
Alignment:
| Q |
56 |
tacaggtcattaagaaaacaaattcagtactttcccaataggttgatgaaaataaagtggacaataatattttgcatgccaagaccctttgggtgcttga |
155 |
Q |
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| T |
39250424 |
tacagatcattaagaaacgaaattcagcactttcccaacatgatgatgaaattgaagtggacattgatagtgtggatgcagagactctttgggagcttga |
39250523 |
T |
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| Q |
156 |
tagatttgtgtccaaccatgagaaaagttt |
185 |
Q |
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| T |
39250524 |
cagatatgttaccaactataagaaaagttt |
39250553 |
T |
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