View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20514_high_4 (Length: 622)
Name: NF20514_high_4
Description: NF20514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20514_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 557; Significance: 0; HSPs: 23)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 20 - 612
Target Start/End: Original strand, 26207288 - 26207880
Alignment:
| Q |
20 |
cagatggtgttgaaaacatcaaagatgccacttcccatgaaatgcttggtaaaatcatgcttggaattgcgaagatccaagatcaaattgagattttgtt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
26207288 |
cagatggtgttgaaaacatcaaagatgccacttcccgtgaaatgcttggtaaaatcatgcttggaattgcgaacatccatgatcaaattgagattttgtt |
26207387 |
T |
|
| Q |
120 |
ccgtgatctccaaccagattgtatagtctcagatatgttatttccttggacagtggaagcagctgcaaaactcggcattccaaggctttactattacagc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26207388 |
ccgtgatctccaaccagattgtatagtctcagatatgttatatccatggacagtggaatcagctgcaaaactcggcattccaaggctttactattacagc |
26207487 |
T |
|
| Q |
220 |
tcaagctacttctcaagttgtgcagctcactttatcaagaagcaaaagcctcatgagaatttagtttctgactctcaaaaattctcaattcctggtcttc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
26207488 |
tcaagctacttctcaagttgtgcagctcactttatcaagaagcaaaagcctcatgagaatttagtttctgattctcaaaaattcttaattcctggtcttc |
26207587 |
T |
|
| Q |
320 |
cacataacattgagattacttctctacaattacaagaatatgtgagggaaaggagtgaattctcagactattttgatgctgtacatgaatcggagggaag |
419 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26207588 |
cacataacattgagattacttctttacaattacaagaatatgtgagggaaaggagtgaattctcagactattttgatgctgtacatgaatcggagggaag |
26207687 |
T |
|
| Q |
420 |
aagctatggaactctaagcaatagctttcacgaacttgaaggtgattatgagaatctttacaagagcacaatggggatcaaagcatggagcgtaggacca |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26207688 |
aagctatggaactctaagcaatagctttcacgaacttgaaggtgattatgagaatctttacaagagcacaatggggatcaaagcatggagcgtaggacca |
26207787 |
T |
|
| Q |
520 |
gtttcagcatgggttaaaaaggtgcagaatgaagaccttgcagtagagtcggaattgcttaactggcttaattcaaagccaaatgattctgtg |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26207788 |
gtttcagcatgggttaaaaaggtgcagaatgaagaccttgcagtagagtcggaattgcttaactggcttaattcaaagccaaatgattctgtg |
26207880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 216 - 612
Target Start/End: Original strand, 26227045 - 26227441
Alignment:
| Q |
216 |
cagctcaagctacttctcaagttgtgcagctcactttatcaagaagcaaaagcctcatgagaatttagtttctgactctcaaaaattctcaattcctggt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26227045 |
cagctcaagctacttctcaagttgtgcagctcactttatcaagaagcaaaagcctcatgagaatttagtttctgattctcaaaaattctcaattcctggt |
26227144 |
T |
|
| Q |
316 |
cttccacataacattgagattacttctctacaattacaagaatatgtgagggaaaggagtgaattctcagactattttgatgctgtacatgaatcggagg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
26227145 |
cttccacataacattgagattacttctctacaattacaagaatatgtgagggaatggagtgaattctcagattattttgatgctgtatatgaatcagagg |
26227244 |
T |
|
| Q |
416 |
gaagaagctatggaactctaagcaatagctttcacgaacttgaaggtgattatgagaatctttacaagagcacaatggggatcaaagcatggagcgtagg |
515 |
Q |
| |
|
||| ||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26227245 |
gaaaaagttatggaactttatgcaatagctttcacgaacttgaaggtgattatgagaatctttacaagagcacaatggggatcaaagcatggagtgtagg |
26227344 |
T |
|
| Q |
516 |
accagtttcagcatgggttaaaaaggtgcagaatgaagaccttgcagtagagtcggaattgcttaactggcttaattcaaagccaaatgattctgtg |
612 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26227345 |
accagtttcagcatggcttaaaaaggagcagaatgaagacgttattgtagagtcggaattgcttaactggcttaattcaaagccgaatgattctgtg |
26227441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 26226823 - 26227051
Alignment:
| Q |
20 |
cagatggtgttgaaaacatcaaagatgccacttcccatgaaatgcttggtaaaatcatgcttggaattgcgaagatccaagatcaaattgagattttgtt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26226823 |
cagatggtgttgaaaacatcaaagatgccacttcccgtgaaatgcttggtaaaatcatgcttggaattgcgaagatccaagatcaaattgagattttgtt |
26226922 |
T |
|
| Q |
120 |
ccgtgatctccaaccagattgtatagtctcagatatgttatttccttggacagtggaagcagctgcaaaactcggcattccaaggctttactattacagc |
219 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
26226923 |
ccatgatctccaacaagattgtatagtctcagatatgttatttccttggacagtgcaatcagctgcaaaacgcggcattcctaggctttactattacagc |
26227022 |
T |
|
| Q |
220 |
tcaagctacttctcaagttgtgcagctca |
248 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
26227023 |
tcaagctacttctcaagttgtgcagctca |
26227051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 20 - 541
Target Start/End: Original strand, 26259752 - 26260273
Alignment:
| Q |
20 |
cagatggtgttgaaaacatcaaagatgccacttcccatgaaatgcttggtaaaatcatgcttggaattgcgaagatccaagatcaaattgagattttgtt |
119 |
Q |
| |
|
|||| ||||| |||||||||||||||| |||||| |||||||||||||||||| | ||||||| | | | |||||||||||||| ||| |||| |
|
|
| T |
26259752 |
cagaaggtgtcgaaaacatcaaagatggaacttccttagaaatgcttggtaaaatcggtcatggaatttcattgcttcaagatcaaattgaaattctgtt |
26259851 |
T |
|
| Q |
120 |
ccgtgatctccaaccagattgtatagtctcagatatgttatttccttggacagtggaagcagctgcaaaactcggcattccaaggctttactattacagc |
219 |
Q |
| |
|
| ||||| ||||| ||||| |||||||| |||||||| | |||||||||||| ||| |||| || |||||||| |||||||| | |||||||||||| |
|
|
| T |
26259852 |
tcaagatcttcaacctgattgcatagtctctgatatgttctatccttggacagttgaatcagcagcgaaactcggtgttccaaggatctactattacagc |
26259951 |
T |
|
| Q |
220 |
tcaagctacttctcaagttgtgcagctcactttatcaagaagcaaaagcctcatgagaatttagtttctgactctcaaaaattctcaattcctggtcttc |
319 |
Q |
| |
|
||||||||||| || || ||| ||||| ||||||| ||| | |||||||||||||||||||||||||| ||| || |||||||| | |||| |
|
|
| T |
26259952 |
tcaagctacttttctagctgttgtgctcattttatcagaaagtataagcctcatgagaatttagtttctgatggccaacttttttcaattccggaacttc |
26260051 |
T |
|
| Q |
320 |
cacataacattgagattacttctctacaattacaagaat-atgtgagggaaaggagtgaattctcagactattttgatgctgtacatgaatcggagggaa |
418 |
Q |
| |
|
||||||||||||||||||||||| | || || |||||| ||| ||| || ||| |||||||||| ||||| |||| ||| ||||||| || | | |
|
|
| T |
26260052 |
cacataacattgagattacttctttgcagctagaagaatggtgt-aggactagaagtcaattctcagattatttggatgtggtatatgaatcagaaagca |
26260150 |
T |
|
| Q |
419 |
gaagctatggaactctaagcaatagctttcacgaacttgaaggtgattatgagaatctttacaagagcacaatggggatcaaagcatggagcgtaggacc |
518 |
Q |
| |
|
|||||| ||||| || ||||||||||| || |||||| ||||||||||| | |||||||||||||| ||| ||| ||||||||||| || ||||| |
|
|
| T |
26260151 |
aaagctacggaacactgtataatagctttcatgatcttgaaagtgattatgagcaactttacaagagcaccatgaagattaaagcatggagtgtgggacc |
26260250 |
T |
|
| Q |
519 |
agtttcagcatgggttaaaaagg |
541 |
Q |
| |
|
||||||| ||||| |||| |||| |
|
|
| T |
26260251 |
agtttcaacatggattaacaagg |
26260273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 22 - 315
Target Start/End: Original strand, 26155058 - 26155351
Alignment:
| Q |
22 |
gatggtgttgaaaacatcaaagatgccacttcccatgaaatgcttggtaaaatcatgcttggaattgcgaagatccaagatcaaattgagattttgttcc |
121 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| |||||| || ||||||||| |||||||| | | | ||||||||| |||||| |||||| | |
|
|
| T |
26155058 |
gatggtgttgaaaacatgaaagatggaacttcatttgaaatactaggtaaaatcggccttggaatatccatgctccaagatccgattgaggctttgtttc |
26155157 |
T |
|
| Q |
122 |
gtgatctccaaccagattgtatagtctcagatatgttatttccttggacagtggaagcagctgcaaaactcggcattccaaggctttactattacagctc |
221 |
Q |
| |
|
|| || ||||| ||||||||||| |||||||| | ||||||||||| || ||||||||||||| ||| || |||||||| || | ||||||||||| |
|
|
| T |
26155158 |
aagaccttcaacctgattgtatagtgacagatatgatgtttccttggacggtcgaagcagctgcaagactaggtattccaagaattcattattacagctc |
26155257 |
T |
|
| Q |
222 |
aagctacttctcaagttgtgcagctcactttatcaagaagcaaaagcctcatgagaatttagtttctgactctcaaaaattctcaattcctggt |
315 |
Q |
| |
|
|||||||||||| | |||||| ||||| || |||| |||| | | |||||||| |||||||||||||| | || ||||| ||||||||||| |
|
|
| T |
26155258 |
aagctacttctccaattgtgctgctcatttgatcatgaagtatagacctcatgataatttagtttctgatacacacaaatttacaattcctggt |
26155351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 124 - 335
Target Start/End: Original strand, 26191222 - 26191433
Alignment:
| Q |
124 |
gatctccaaccagattgtatagtctcagatatgttatttccttggacagtggaagcagctgcaaaactcggcattccaaggctttactattacagctcaa |
223 |
Q |
| |
|
||||| |||||||||||||||||| | |||||| | | |||||||||||||||||||||||||||||| |||||||||| || ||| ||| ||||||| |
|
|
| T |
26191222 |
gatcttcaaccagattgtatagtcactgatatgatgtatccttggacagtggaagcagctgcaaaactaaacattccaaggattcacttttatagctcaa |
26191321 |
T |
|
| Q |
224 |
gctacttctcaagttgtgcagctcactttatcaagaagcaaaagcctcatgagaatttagtttctgactctcaaaaattctcaattcctggtcttccaca |
323 |
Q |
| |
|
| |||||||| || ||||| ||| ||||||| ||| | | ||||||||| |||||||||||||| | || ||||| | |||||| || |||| || |
|
|
| T |
26191322 |
gttacttctccagctgtgcctttcattttatcatgaaatataggcctcatgataatttagtttctgatacacagaaatttactattcctagttttcctca |
26191421 |
T |
|
| Q |
324 |
taacattgagat |
335 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
26191422 |
taccattgagat |
26191433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 105 - 344
Target Start/End: Original strand, 26179021 - 26179260
Alignment:
| Q |
105 |
aattgagattttgttccgtgatctccaaccagattgtatagtctcagatatgttatttccttggacagtggaagcagctgcaaaactcggcattccaagg |
204 |
Q |
| |
|
||||||||||||||| | ||||| ||||| |||||||| ||| | ||||||| | ||| |||||||||||||||||||||||||| || |||||||| |
|
|
| T |
26179021 |
aattgagattttgtttcaagatcttcaacctgattgtattgtcactgatatgtcgtatccgtggacagtggaagcagctgcaaaactaggtattccaaga |
26179120 |
T |
|
| Q |
205 |
ctttactattacagctcaagctacttctcaagttgtgcagctcactttatcaagaagcaaaagcctcatgagaatttagtttctgactctcaaaaattct |
304 |
Q |
| |
|
|| | ||||||||||||||||||||||| | ||||| ||||| || |||| |||| | | || |||| |||||||||||||| | || ||||| |
|
|
| T |
26179121 |
attcattattacagctcaagctacttctccaattgtgttgctcatttgatcatgaagtatagaccaaatgataatttagtttctgatacacagaaattta |
26179220 |
T |
|
| Q |
305 |
caattcctggtcttccacataacattgagattacttctct |
344 |
Q |
| |
|
|||||||| || |||| |||| |||||||| ||| |||| |
|
|
| T |
26179221 |
caattccttgttttcctcatacaattgagatgactcctct |
26179260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 20 - 233
Target Start/End: Complemental strand, 19103841 - 19103628
Alignment:
| Q |
20 |
cagatggtgttgaaaacatcaaagatgccacttcccatgaaatgcttggtaaaatcatgcttggaattgcgaagatccaagatcaaattgagattttgtt |
119 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||||| || | ||||||||| || |||| | |||| |
|
|
| T |
19103841 |
cagatggtgttgaaaacatcaaagatggaacttcacttgaaatgcttggtaaaatcagcagtggaatattgatgctccaagatcctatcgagaatctgtt |
19103742 |
T |
|
| Q |
120 |
ccgtgatctccaaccagattgtatagtctcagatatgttatttccttggacagtggaagcagctgcaaaactcggcattccaaggctttactattacagc |
219 |
Q |
| |
|
| ||||| | ||||||||||||||| | ||| | | | | ||||||| || ||||||||||||||||| || |||||||| || ||||||||||| |
|
|
| T |
19103741 |
tcacgatcttcgaccagattgtatagttactgatcagatgtatgcttggaccgtcgaagcagctgcaaaactaggtattccaagaattcactattacagc |
19103642 |
T |
|
| Q |
220 |
tcaagctacttctc |
233 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
19103641 |
tcaagctacttctc |
19103628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 97 - 243
Target Start/End: Original strand, 26223462 - 26223608
Alignment:
| Q |
97 |
caagatcaaattgagattttgttccgtgatctccaaccagattgtatagtctcagatatgttatttccttggacagtggaagcagctgcaaaactcggca |
196 |
Q |
| |
|
|||||||||||||| ||| |||| | ||||| ||||||||||||||| | | |||||| | |||||||||||| ||| ||||||||||||| || |
|
|
| T |
26223462 |
caagatcaaattgaaattctgtttcaagatcttcaaccagattgtataataacggatatgacttatccttggacagttgaatcagctgcaaaactaaaca |
26223561 |
T |
|
| Q |
197 |
ttccaaggctttactattacagctcaagctacttctcaagttgtgca |
243 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||| | ||||||| |
|
|
| T |
26223562 |
ttccaaggatttacttttacagctcaagctacttctccaattgtgca |
26223608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 97 - 242
Target Start/End: Original strand, 26203824 - 26203969
Alignment:
| Q |
97 |
caagatcaaattgagattttgttccgtgatctccaaccagattgtatagtctcagatatgttatttccttggacagtggaagcagctgcaaaactcggca |
196 |
Q |
| |
|
|||||||||||||| ||| |||| | ||||| ||||||||||||||| | | |||||| | |||||||||||| ||| ||||||||||||| || |
|
|
| T |
26203824 |
caagatcaaattgaaattctgtttcaagatcttcaaccagattgtataataactgatatgacttatccttggacagttgaatcagctgcaaaactaaaca |
26203923 |
T |
|
| Q |
197 |
ttccaaggctttactattacagctcaagctacttctcaagttgtgc |
242 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||| | |||||| |
|
|
| T |
26203924 |
ttccaaggatttacttttacagctcaagctacttctccaattgtgc |
26203969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 139 - 290
Target Start/End: Original strand, 26087753 - 26087904
Alignment:
| Q |
139 |
tgtatagtctcagatatgttatttccttggacagtggaagcagctgcaaaactcggcattccaaggctttactattacagctcaagctacttctcaagtt |
238 |
Q |
| |
|
|||||||| || ||||| | ||||||||||| || ||||||||||||||||| || |||||||| || ||||||||||||||||||||||||| | | |
|
|
| T |
26087753 |
tgtatagtgacaaatatgatgtttccttggacggtcgaagcagctgcaaaactaggtattccaagaattcactattacagctcaagctacttctccaact |
26087852 |
T |
|
| Q |
239 |
gtgcagctcactttatcaagaagcaaaagcctcatgagaatttagtttctga |
290 |
Q |
| |
|
|||||| || ||||||| |||| | | |||||||| ||||| |||||||| |
|
|
| T |
26087853 |
gtgcagaacattttatcatgaagtatagacctcatgataatttggtttctga |
26087904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 139 - 290
Target Start/End: Original strand, 26111541 - 26111692
Alignment:
| Q |
139 |
tgtatagtctcagatatgttatttccttggacagtggaagcagctgcaaaactcggcattccaaggctttactattacagctcaagctacttctcaagtt |
238 |
Q |
| |
|
|||||||| || ||||| | ||||||||||| || ||||||||||||||||| || |||||||| || ||||||||||||||||||||||||| | | |
|
|
| T |
26111541 |
tgtatagtgacaaatatgatgtttccttggacggtcgaagcagctgcaaaactaggtattccaagaattcactattacagctcaagctacttctccaact |
26111640 |
T |
|
| Q |
239 |
gtgcagctcactttatcaagaagcaaaagcctcatgagaatttagtttctga |
290 |
Q |
| |
|
|||||| || ||||||| |||| | | |||||||| ||||| |||||||| |
|
|
| T |
26111641 |
gtgcagaacattttatcatgaagtatagacctcatgataatttggtttctga |
26111692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 22 - 233
Target Start/End: Original strand, 26301666 - 26301877
Alignment:
| Q |
22 |
gatggtgttgaaaacatcaaagatgccacttcccatgaaatgcttggtaaaatcatgcttggaattgcgaagatccaagatcaaattgagattttgttcc |
121 |
Q |
| |
|
||||||||||||||| |||| |||| ||||| | |||||| ||||||||||||| | | | || ||| | |||||||| ||| ||| ||||||| | |
|
|
| T |
26301666 |
gatggtgttgaaaacttcaatgatggaacttcacttgaaatacttggtaaaatcagccgtcggataccgatgctccaagattcaatcgaggttttgtttc |
26301765 |
T |
|
| Q |
122 |
gtgatctccaaccagattgtatagtctcagatatgttatttccttggacagtggaagcagctgcaaaactcggcattccaaggctttactattacagctc |
221 |
Q |
| |
|
|| || |||||||||||||||||| | |||||| | | |||||||||||| ||| ||||| ||||||| |||||| ||| | |||| ||||||||| |
|
|
| T |
26301766 |
aagaacttcaaccagattgtatagtcaccgatatgctgtatccttggacagttgaatcagcttcaaaactgaacattccgaggatgtacttttacagctc |
26301865 |
T |
|
| Q |
222 |
aagctacttctc |
233 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26301866 |
aagctacttctc |
26301877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 130 - 233
Target Start/End: Original strand, 26297408 - 26297511
Alignment:
| Q |
130 |
caaccagattgtatagtctcagatatgttatttccttggacagtggaagcagctgcaaaactcggcattccaaggctttactattacagctcaagctact |
229 |
Q |
| |
|
||||||||||||||||| |||||||| || |||||||| |||||| ||||||||||||| |||||||||| || ||| ||||||||||||||||| |
|
|
| T |
26297408 |
caaccagattgtatagtgacagatatgaaatacccttggactgtggaatcagctgcaaaactaaacattccaaggattgacttttacagctcaagctact |
26297507 |
T |
|
| Q |
230 |
tctc |
233 |
Q |
| |
|
|||| |
|
|
| T |
26297508 |
tctc |
26297511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 130 - 344
Target Start/End: Original strand, 26128530 - 26128744
Alignment:
| Q |
130 |
caaccagattgtatagtctcagatatgttatttccttggacagtggaagcagctgcaaaactcggcattccaaggctttactattacagctcaagctact |
229 |
Q |
| |
|
||||| ||||||||||| |||||||| | |||||||||| || ||||||||||||||||| || |||||||| || | ||| ||||||||||||||| |
|
|
| T |
26128530 |
caacctgattgtatagtgacagatatgatgcttccttggacggtcgaagcagctgcaaaactaggtattccaagaattcattataacagctcaagctact |
26128629 |
T |
|
| Q |
230 |
tctcaagttgtgcagctcactttatcaagaagcaaaagcctcatgagaatttagtttctgactctcaaaaattctcaattcctggtcttccacataacat |
329 |
Q |
| |
|
|||| | ||||||| || ||||||| |||| | | || |||| |||||||||||||| | || ||||| ||||||||||| | || |||| || |
|
|
| T |
26128630 |
tctccaactgtgcagaacattttatcatgaagtatagaccaaatgataatttagtttctgatacacagaaatttacaattcctggtttgcctcatacaat |
26128729 |
T |
|
| Q |
330 |
tgagattacttctct |
344 |
Q |
| |
|
|||||| ||| |||| |
|
|
| T |
26128730 |
tgagatgactcctct |
26128744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 26242354 - 26242463
Alignment:
| Q |
124 |
gatctccaaccagattgtatagtctcagatatgttatttccttggacagtggaagcagctgcaaaactcggcattccaaggctttactattacagctcaa |
223 |
Q |
| |
|
||||| |||||||||||||||||| | |||||| | | ||||||||| |||||| ||||||||||||| ||||||||| || ||| || |||||||| |
|
|
| T |
26242354 |
gatcttcaaccagattgtatagtcactgatatgatgtatccttggactgtggaatcagctgcaaaactaaatattccaaggattcacttttgcagctcaa |
26242453 |
T |
|
| Q |
224 |
gctacttctc |
233 |
Q |
| |
|
|||||||||| |
|
|
| T |
26242454 |
gctacttctc |
26242463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 233
Target Start/End: Original strand, 26250808 - 26250911
Alignment:
| Q |
130 |
caaccagattgtatagtctcagatatgttatttccttggacagtggaagcagctgcaaaactcggcattccaaggctttactattacagctcaagctact |
229 |
Q |
| |
|
||||||||||||||||| |||||||| | ||||||||| || ||| ||||||||||||| |||||||||| |||||| || |||||||||||||| |
|
|
| T |
26250808 |
caaccagattgtatagtgacagatatgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggatttacttttgcagctcaagctact |
26250907 |
T |
|
| Q |
230 |
tctc |
233 |
Q |
| |
|
|||| |
|
|
| T |
26250908 |
tctc |
26250911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 404 - 541
Target Start/End: Original strand, 26191502 - 26191639
Alignment:
| Q |
404 |
atgaatcggagggaagaagctatggaactctaagcaatagctttcacgaacttgaaggtgattatgagaatctttacaagagcacaatggggatcaaagc |
503 |
Q |
| |
|
||||||| |||| || ||||||||| || ||| |||||| ||||| ||||| ||| |||| |||||||| |||| || | |||| |||||||||| | |
|
|
| T |
26191502 |
atgaatcagaggaaaaaagctatggcacactatacaatagttttcatgaactagaaagtgaatatgagaaactttgtaatactacaagggggatcaaatc |
26191601 |
T |
|
| Q |
504 |
atggagcgtaggaccagtttcagcatgggttaaaaagg |
541 |
Q |
| |
|
||||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
26191602 |
ttggagtgtaggaccagtttcagcttgggctaaaaagg |
26191639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 445 - 541
Target Start/End: Original strand, 26242675 - 26242771
Alignment:
| Q |
445 |
tttcacgaacttgaaggtgattatgagaatctttacaagagcacaatggggatcaaagcatggagcgtaggaccagtttcagcatgggttaaaaagg |
541 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||| || | ||||| || |||||| ||||||| || |||||||||||||| |||| ||| |||| |
|
|
| T |
26242675 |
tttcatgaacttgaaagtgattatgagaatcttagtaaaactacaatcggaatcaaatcatggagtgtcggaccagtttcagcctgggctaacaagg |
26242771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 536
Target Start/End: Original strand, 26204144 - 26204263
Alignment:
| Q |
417 |
aagaagctatggaactctaagcaatagctttcacgaacttgaaggtgattatgagaatctttacaagagcacaatggggatcaaagcatggagcgtagga |
516 |
Q |
| |
|
|||||||| |||||| ||| |||||| ||||| ||||| ||| ||||||||||||| ||| || | ||||| ||||||||| | ||||| ||||| |
|
|
| T |
26204144 |
aagaagctttggaacactatacaatagttttcatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtatagga |
26204243 |
T |
|
| Q |
517 |
ccagtttcagcatgggttaa |
536 |
Q |
| |
|
|| |||||||||||| |||| |
|
|
| T |
26204244 |
ccggtttcagcatggattaa |
26204263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 536
Target Start/End: Original strand, 26223782 - 26223901
Alignment:
| Q |
417 |
aagaagctatggaactctaagcaatagctttcacgaacttgaaggtgattatgagaatctttacaagagcacaatggggatcaaagcatggagcgtagga |
516 |
Q |
| |
|
|||||||| |||||| ||| |||||| ||||| ||||| ||| ||||||||||||| ||| || | ||||| ||||||||| | ||||| ||||| |
|
|
| T |
26223782 |
aagaagctttggaacactatacaatagttttcatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtatagga |
26223881 |
T |
|
| Q |
517 |
ccagtttcagcatgggttaa |
536 |
Q |
| |
|
|| |||||||||||| |||| |
|
|
| T |
26223882 |
ccggtttcagcatggattaa |
26223901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 417 - 527
Target Start/End: Original strand, 26179333 - 26179443
Alignment:
| Q |
417 |
aagaagctatggaactctaagcaatagctttcacgaacttgaaggtgattatgagaatctttacaagagcacaatggggatcaaagcatggagcgtagga |
516 |
Q |
| |
|
|||||| |||||||| ||| |||||| ||||| ||||||||| |||||||||| || | || | ||||||||||||||| | ||||| |||||| |
|
|
| T |
26179333 |
aagaagttatggaacactatacaatagttttcatgaacttgaaagtgattatgaaaaattaagtaacactacaatggggatcaaaacttggagtgtagga |
26179432 |
T |
|
| Q |
517 |
ccagtttcagc |
527 |
Q |
| |
|
||||||||||| |
|
|
| T |
26179433 |
ccagtttcagc |
26179443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 541
Target Start/End: Original strand, 26297682 - 26297819
Alignment:
| Q |
404 |
atgaatcggagggaagaagctatggaactctaagcaatagctttcacgaacttgaaggtgattatgagaatctttacaagagcacaatggggatcaaagc |
503 |
Q |
| |
|
||||||| | || |||||||||||| | ||| ||| || ||||| ||||||||| ||||||||||||| |||| || | ||||| || ||||| | |
|
|
| T |
26297682 |
atgaatcagcggaaagaagctatgggtcactatacaacagttttcatgaacttgaaagtgattatgagaaactttttaaaactacaatcggaatcaagtc |
26297781 |
T |
|
| Q |
504 |
atggagcgtaggaccagtttcagcatgggttaaaaagg |
541 |
Q |
| |
|
|||||| || |||||||||||||| |||| ||| |||| |
|
|
| T |
26297782 |
atggagtgtcggaccagtttcagcctgggctaacaagg |
26297819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 124 - 243
Target Start/End: Original strand, 44903207 - 44903326
Alignment:
| Q |
124 |
gatctccaaccagattgtatagtctcagatatgttatttccttggacagtggaagcagctgcaaaactcggcattccaaggctttactattacagctcaa |
223 |
Q |
| |
|
||||| ||||||||||||||||| | |||||| | |||||||||| |||||| ||||||||||||| ||||||| |||||||| ||||||||||||| |
|
|
| T |
44903207 |
gatcttcaaccagattgtatagtaactgatatgatgattccttggactgtggaatcagctgcaaaactaagcattcctaggctttattattacagctcaa |
44903306 |
T |
|
| Q |
224 |
gctacttctcaagttgtgca |
243 |
Q |
| |
|
|||||||||| | ||||||| |
|
|
| T |
44903307 |
gctacttctccaattgtgca |
44903326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 473
Target Start/End: Original strand, 44903488 - 44903556
Alignment:
| Q |
405 |
tgaatcggagggaagaagctatggaactctaagcaatagctttcacgaacttgaaggtgattatgagaa |
473 |
Q |
| |
|
||||||||||| |||||| ||||| || || ||||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
44903488 |
tgaatcggaggcaagaagttatgggacaatatgcaatagttttcatgaacttgaaagtgattatgagaa |
44903556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University