View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20514_high_5 (Length: 590)

Name: NF20514_high_5
Description: NF20514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20514_high_5
NF20514_high_5
[»] chr3 (53 HSPs)
chr3 (224-572)||(30172984-30173347)
chr3 (267-572)||(30049342-30049663)
chr3 (263-432)||(30135795-30135964)
chr3 (263-432)||(30141924-30142093)
chr3 (263-432)||(30145346-30145515)
chr3 (267-432)||(30072377-30072542)
chr3 (225-432)||(30079597-30079804)
chr3 (223-377)||(30055991-30056145)
chr3 (220-380)||(29920747-29920907)
chr3 (220-380)||(29926930-29927090)
chr3 (220-380)||(29969900-29970060)
chr3 (220-380)||(29976084-29976244)
chr3 (266-548)||(30131004-30131271)
chr3 (457-548)||(30072244-30072336)
chr3 (471-572)||(30085848-30085948)
chr3 (471-560)||(30055796-30055886)
chr3 (31-108)||(30056263-30056340)
chr3 (267-432)||(30068782-30068947)
chr3 (223-366)||(30157259-30157402)
chr3 (24-106)||(30173468-30173550)
chr3 (244-365)||(30086057-30086178)
chr3 (25-104)||(30086324-30086403)
chr3 (24-117)||(30049828-30049921)
chr3 (323-432)||(30462968-30463077)
chr3 (246-341)||(30171949-30172044)
chr3 (15-114)||(30459488-30459587)
chr3 (24-117)||(30069112-30069204)
chr3 (500-548)||(30135717-30135765)
chr3 (500-548)||(30141846-30141894)
chr3 (500-548)||(30145268-30145316)
chr3 (34-103)||(30083561-30083630)
chr3 (25-105)||(30079924-30080004)
chr3 (15-103)||(30072716-30072804)
chr3 (441-481)||(30463104-30463144)
chr3 (24-103)||(30136139-30136218)
chr3 (24-103)||(30142268-30142347)
chr3 (24-103)||(30145690-30145769)
chr3 (267-310)||(30459752-30459795)
chr3 (242-348)||(12110210-12110316)
chr3 (52-106)||(29920582-29920636)
chr3 (52-106)||(29927201-29927255)
chr3 (52-106)||(29969735-29969789)
chr3 (52-106)||(29976355-29976409)
chr3 (18-64)||(30077413-30077459)
chr3 (24-73)||(30133196-30133245)
chr3 (24-73)||(30134592-30134641)
chr3 (24-73)||(30144143-30144192)
chr3 (36-96)||(30131450-30131510)
chr3 (500-548)||(30463139-30463187)
chr3 (487-548)||(29921040-29921103)
chr3 (487-548)||(29926734-29926797)
chr3 (487-548)||(29970193-29970256)
chr3 (487-548)||(29975888-29975951)
[»] chr6 (2 HSPs)
chr6 (226-354)||(6802982-6803110)
chr6 (267-365)||(12837543-12837641)
[»] chr8 (2 HSPs)
chr8 (226-332)||(7947056-7947162)
chr8 (226-332)||(7941505-7941611)


Alignment Details
Target: chr3 (Bit Score: 143; Significance: 8e-75; HSPs: 53)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 224 - 572
Target Start/End: Complemental strand, 30173347 - 30172984
Alignment:
Q  224 aaaagatggttgaagaaaatcctaacttatgtcaatctgatactgaatgcaaaaagaagggtagtgggaattattgtgctcgttttcctaattctgatct 323  Q
    |||||| |||||| ||| | ||||||||||||   ||| || ||||||||| ||  ||||||||||||||||||||||||| | ||||||||||| || |    
T  30173347 aaaagaaggttgaggaacaacctaacttatgttggtctcatgctgaatgcataagaaagggtagtgggaattattgtgctcatcttcctaattctaatat 30173248  T
Q  324 caaatatggtttctgttttgcctctatctctgatgcagaagacacattcaagatggcatcaaggtttaaattcaacaaagatttcttgaagatgtctctt 423  Q
    ||||||||| ||||||||||||||||||||||  |||||||  ||||||||||||||| | ||   || |||||| |   | ||||||||||||||| ||    
T  30173247 caaatatggcttctgttttgcctctatctctgtagcagaagctacattcaagatggcagctagcactatattcaaaagcaacttcttgaagatgtctgtt 30173148  T
Q  424 cccgcttaaattcaa-----------------ccatgctagatatatgttatgcatctatgtactactttaaatagtagtctttgtttccaactaaataa 506  Q
    || ||||||  ||||                 ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30173147 cctgcttaatatcaatatgcaagaaaagcctaccatgctagatgtatattatgcatctatgtactactttaaatagtagtctttgtttccaactaaataa 30173048  T
Q  507 ttgggtttcttaatatccatccaaatttcaataatgatgtatatatgcatggttgtggctatttaa 572  Q
    |||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  30173047 ttggatttcttaatatccatccaaatttcaataatgatgt--atatgcatggttgtggctatttaa 30172984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 267 - 572
Target Start/End: Complemental strand, 30049663 - 30049342
Alignment:
Q  267 tgaatgcaaaaagaagggtagtgggaattattgtgctcgttttcctaattctgatctcaaatatggtttctgttttgcctctatctctgatgcagaagac 366  Q
    |||||||| ||| |||||||||||||||||||||||||  ||||| |||||| ||||||||||||| | ||||||||||||| ||||||| ||| |||||    
T  30049663 tgaatgcacaaaaaagggtagtgggaattattgtgctcactttccaaattctaatctcaaatatggctactgttttgcctctgtctctgaagcacaagac 30049564  T
Q  367 acattcaagatggcatcaaggtttaaattcaacaaagatttcttgaagatgtctcttcccgcttaaattcaa------------------ccatgctaga 448  Q
     ||| |||||| || || || || |||||||| ||||| |||||||||||||||||||| ||||||  || |                  | ||||||||    
T  30049563 gcatacaagatagcctctagcttgaaattcaagaaagacttcttgaagatgtctcttcctgcttaatatcgatatgtgaaaaaaagcctacgatgctaga 30049464  T
Q  449 tatatgttatgcatctatgtactactttaaatagtagtctttgtttccaactaaataattgggtttcttaatatccatccaaatttcaataatgatgtat 548  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||      
T  30049463 tatatattatgcatctatgtactactttaaatagtagtctttgtttccgtctaaataattgggtttcttaatatccatccaaatttcaataatgatgt-- 30049366  T
Q  549 atatgcatggttgtggctatttaa 572  Q
    ||||||||||||||||||||||||    
T  30049365 atatgcatggttgtggctatttaa 30049342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 263 - 432
Target Start/End: Complemental strand, 30135964 - 30135795
Alignment:
Q  263 atactgaatgcaaaaagaagggtagtgggaattattgtgctcgttttcctaattctgatctcaaatatggtttctgttttgcctctatctctgatgcaga 362  Q
    |||||||||||| | | ||||||||||||||||||||||||||||||||||||||  ||||||||||||| || |||||| ||||||||||||| ||||     
T  30135964 atactgaatgcacagaaaagggtagtgggaattattgtgctcgttttcctaattccaatctcaaatatggcttgtgttttccctctatctctgaagcagt 30135865  T
Q  363 agacacattcaagatggcatcaaggtttaaattcaacaaagatttcttgaagatgtctcttcccgcttaa 432  Q
    | |||||||||||||||| || || || |||||| | ||||| |||||||||||||||||||| ||||||    
T  30135864 aaacacattcaagatggcctctagcttgaaattcgaaaaagacttcttgaagatgtctcttcctgcttaa 30135795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 263 - 432
Target Start/End: Complemental strand, 30142093 - 30141924
Alignment:
Q  263 atactgaatgcaaaaagaagggtagtgggaattattgtgctcgttttcctaattctgatctcaaatatggtttctgttttgcctctatctctgatgcaga 362  Q
    |||||||||||| | | ||||||||||||||||||||||||||||||||||||||  ||||||||||||| || |||||| ||||||||||||| ||||     
T  30142093 atactgaatgcacagaaaagggtagtgggaattattgtgctcgttttcctaattccaatctcaaatatggcttgtgttttccctctatctctgaagcagt 30141994  T
Q  363 agacacattcaagatggcatcaaggtttaaattcaacaaagatttcttgaagatgtctcttcccgcttaa 432  Q
    | |||||||||||||||| || || || |||||| | ||||| |||||||||||||||||||| ||||||    
T  30141993 aaacacattcaagatggcctctagcttgaaattcgaaaaagacttcttgaagatgtctcttcctgcttaa 30141924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 263 - 432
Target Start/End: Complemental strand, 30145515 - 30145346
Alignment:
Q  263 atactgaatgcaaaaagaagggtagtgggaattattgtgctcgttttcctaattctgatctcaaatatggtttctgttttgcctctatctctgatgcaga 362  Q
    |||||||||||| | | ||||||||||||||||||||||||||||||||||||||  ||||||||||||| || |||||| ||||||||||||| ||||     
T  30145515 atactgaatgcacagaaaagggtagtgggaattattgtgctcgttttcctaattccaatctcaaatatggcttgtgttttccctctatctctgaagcagt 30145416  T
Q  363 agacacattcaagatggcatcaaggtttaaattcaacaaagatttcttgaagatgtctcttcccgcttaa 432  Q
    | |||||||||||||||| || || || |||||| | ||||| |||||||||||||||||||| ||||||    
T  30145415 aaacacattcaagatggcctctagcttgaaattcgaaaaagacttcttgaagatgtctcttcctgcttaa 30145346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 267 - 432
Target Start/End: Complemental strand, 30072542 - 30072377
Alignment:
Q  267 tgaatgcaaaaagaagggtagtgggaattattgtgctcgttttcctaattctgatctcaaatatggtttctgttttgcctctatctctgatgcagaagac 366  Q
    ||||||||  || ||||||||||| ||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||| ||||| | ||| |||||    
T  30072542 tgaatgcaccaaaaagggtagtggaaattattgtgctcattttcctaattctgatatcaaatatggcttctgttttgcctctgtctctaaagcacaagac 30072443  T
Q  367 acattcaagatggcatcaaggtttaaattcaacaaagatttcttgaagatgtctcttcccgcttaa 432  Q
     ||||||||||||| || || | ||||||||| || || |||||||||||||||||||||||||||    
T  30072442 gcattcaagatggcctctagctataaattcaagaatgacttcttgaagatgtctcttcccgcttaa 30072377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 225 - 432
Target Start/End: Complemental strand, 30079804 - 30079597
Alignment:
Q  225 aaagatggttgaagaaaatcctaacttatgtcaatctgatactgaatgcaaaaagaagggtagtgggaattattgtgctcgttttcctaattctgatctc 324  Q
    ||||| |||||||||| ||||||||||||| ||| || | |||||||||| |||||| ||||||||||||| |||||||||||||||||||||| ||| |    
T  30079804 aaagaaggttgaagaacatcctaacttatgccaaactcacactgaatgcacaaagaaaggtagtgggaatttttgtgctcgttttcctaattctaatcgc 30079705  T
Q  325 aaatatggtttctgttttgcctctatctctgatgcagaagacacattcaagatggcatcaaggtttaaattcaacaaagatttcttgaagatgtctcttc 424  Q
    |||||||| |||||| ||||| ||| |||||| ||| ||||  ||||||||||||| ||||| | |||||| || ||  | ||||||||||||| | |||    
T  30079704 aaatatggcttctgtgttgccgctaactctgaagcaaaagaagcattcaagatggcctcaagttctaaattaaaaaattacttcttgaagatgtatgttc 30079605  T
Q  425 ccgcttaa 432  Q
    | ||||||    
T  30079604 ctgcttaa 30079597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 223 - 377
Target Start/End: Complemental strand, 30056145 - 30055991
Alignment:
Q  223 aaaaagatggttgaagaaaatcctaacttatgtcaatctgatactgaatgcaaaaagaagggtagtgggaattattgtgctcgttttcctaattctgatc 322  Q
    ||||||| |||||||||| |||||||||  ||  || || |||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||     
T  30056145 aaaaagaaggttgaagaacatcctaactactgcgaaactcatactgaatgcacaaagaagggtagtgggaatttttgtgctcgttttgctaattctgata 30056046  T
Q  323 tcaaatatggtttctgttttgcctctatctctgatgcagaagacacattcaagat 377  Q
    |||||||||| |  |||||||||||||||||||| |||||| || ||||||||||    
T  30056045 tcaaatatggctggtgttttgcctctatctctgaagcagaaaacgcattcaagat 30055991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 220 - 380
Target Start/End: Original strand, 29920747 - 29920907
Alignment:
Q  220 atgaaaaagatggttgaagaaaatcctaacttatgtcaatctgatactgaatgcaaaaagaagggtagtgggaattattgtgctcgttttcctaattctg 319  Q
    |||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||| |||| |||||||||   |  |||||| |    
T  29920747 atgaaaaagaaggttgaagaaaatcctaacttatgccaaactcatactgaatgcaaaaagaagggtagtggaaatttttgtgctcgccatattaattcag 29920846  T
Q  320 atctcaaatatggtttctgttttgcctctatctctgatgcagaagacacattcaagatggc 380  Q
    || |||||||||| ||||||||||||||| ||||||| ||  ||||| ||| |||||||||    
T  29920847 atgtcaaatatggcttctgttttgcctctttctctgaagcccaagacgcatacaagatggc 29920907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 220 - 380
Target Start/End: Complemental strand, 29927090 - 29926930
Alignment:
Q  220 atgaaaaagatggttgaagaaaatcctaacttatgtcaatctgatactgaatgcaaaaagaagggtagtgggaattattgtgctcgttttcctaattctg 319  Q
    |||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||| |||| |||||||||   |  |||||| |    
T  29927090 atgaaaaagaaggttgaagaaaatcctaacttatgccaaactcatactgaatgcaaaaagaagggtagtggaaatttttgtgctcgccatattaattcag 29926991  T
Q  320 atctcaaatatggtttctgttttgcctctatctctgatgcagaagacacattcaagatggc 380  Q
    || |||||||||| ||||||||||||||| ||||||| ||  ||||| ||| |||||||||    
T  29926990 atgtcaaatatggcttctgttttgcctctttctctgaagcccaagacgcatacaagatggc 29926930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 220 - 380
Target Start/End: Original strand, 29969900 - 29970060
Alignment:
Q  220 atgaaaaagatggttgaagaaaatcctaacttatgtcaatctgatactgaatgcaaaaagaagggtagtgggaattattgtgctcgttttcctaattctg 319  Q
    |||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||| |||| |||||||||   |  |||||| |    
T  29969900 atgaaaaagaaggttgaagaaaatcctaacttatgccaaactcatactgaatgcaaaaagaagggtagtggaaatttttgtgctcgccatattaattcag 29969999  T
Q  320 atctcaaatatggtttctgttttgcctctatctctgatgcagaagacacattcaagatggc 380  Q
    || |||||||||| ||||||||||||||| ||||||| ||  ||||| ||| |||||||||    
T  29970000 atgtcaaatatggcttctgttttgcctctttctctgaagcccaagacgcatacaagatggc 29970060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 220 - 380
Target Start/End: Complemental strand, 29976244 - 29976084
Alignment:
Q  220 atgaaaaagatggttgaagaaaatcctaacttatgtcaatctgatactgaatgcaaaaagaagggtagtgggaattattgtgctcgttttcctaattctg 319  Q
    |||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||| |||| |||||||||   |  |||||| |    
T  29976244 atgaaaaagaaggttgaagaaaatcctaacttatgccaaactcatactgaatgcaaaaagaagggtagtggaaatttttgtgctcgccatattaattcag 29976145  T
Q  320 atctcaaatatggtttctgttttgcctctatctctgatgcagaagacacattcaagatggc 380  Q
    || |||||||||| ||||||||||||||| ||||||| ||  ||||| ||| |||||||||    
T  29976144 atgtcaaatatggcttctgttttgcctctttctctgaagcccaagacgcatacaagatggc 29976084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 266 - 548
Target Start/End: Complemental strand, 30131271 - 30131004
Alignment:
Q  266 ctgaatgcaaaaagaagggtagtgggaattattgtgctcgttttcctaattctgatctcaaatatggtttctgttttgcctctatctctgatgcagaaga 365  Q
    ||||||||| ||| ||||||||||| ||||||||||||||||||||||||      ||  ||||||| || |||||  ||||| ||||||| |||| | |    
T  30131271 ctgaatgcacaaaaaagggtagtggcaattattgtgctcgttttcctaat------cttcaatatggcttgtgtttcccctctgtctctgaagcagtaaa 30131178  T
Q  366 cacattcaagatggcatcaaggtttaaattcaacaaagatttcttgaagatgtctcttcccgcttaaattcaaccatgctagatatatgttatgcatcta 465  Q
    | ||||||||||||| || || || |||||| | ||||| |||||||||||||||||||| ||||||  ||          |||||    ||||||| ||    
T  30131177 cgcattcaagatggcctctagcttgaaattcgaaaaagacttcttgaagatgtctcttcctgcttaatatc----------gatat----tatgcattta 30131092  T
Q  466 tgtactactttaaata-gtag---tctttgtttccaactaaa-taattgggtttcttaatatccatccaaatttcaataatgatgtat 548  Q
    |||||||||||||||| ||||   ||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  30131091 tgtactactttaaataagtagcggtctttgtttccgactaaaataattgggtttcttaatctccatccaaatttcaataatgatgtat 30131004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 457 - 548
Target Start/End: Complemental strand, 30072336 - 30072244
Alignment:
Q  457 atgcatctatgtact-actttaaatagtagtctttgtttccaactaaataattgggtttcttaatatccatccaaatttcaataatgatgtat 548  Q
    ||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30072336 atgcatctatgtacttactttaaatagtagtctttgtttcctgctaaataattgggtttcttaacatccatccaaatttcaataatgatgtat 30072244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 471 - 572
Target Start/End: Complemental strand, 30085948 - 30085848
Alignment:
Q  471 tactttaaata-gtagtctttgtttccaactaaataattgggtttcttaatatccatccaaatttcaataatgatgtatatatgcatggttgtggctatt 569  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || ||| ||||||||||||||    
T  30085948 tactttaaataagtagtctttgtttccaactaaataattgggtttcttaatatccatccaaatttcaataatgatg--catgtgcttggttgtggctatt 30085851  T
Q  570 taa 572  Q
    |||    
T  30085850 taa 30085848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 471 - 560
Target Start/End: Complemental strand, 30055886 - 30055796
Alignment:
Q  471 tactttaaat-agtagtctttgtttccaactaaataattgggtttcttaatatccatccaaatttcaataatgatgtatatatgcatggtt 560  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  30055886 tactttaaattagtagtctttgtttccgactaaataattgggtttcttaatatccatacaaatttcaataatgatgtgtatatgcatggtt 30055796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 30056340 - 30056263
Alignment:
Q  31 ggtatgtgtatgttgttcaaactttaattagcttcgtcatttacagtaatgttcccggtgaagaaaatagaaggagaa 108  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  30056340 ggtatgtgtatgttgttcaaactttaattagctttgtcatttacagtaatgttcccgatgaagaaaatagaaggagaa 30056263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 267 - 432
Target Start/End: Complemental strand, 30068947 - 30068782
Alignment:
Q  267 tgaatgcaaaaagaagggtagtgggaattattgtgctcgttttcctaattctgatctcaaatatggtttctgttttgcctctatctctgatgcagaagac 366  Q
    ||||||||  || |||||||||||||||||||||||||  ||||| |||||| |||||||| |||| ||||||||||||||| ||||||| ||| |||||    
T  30068947 tgaatgcacgaaaaagggtagtgggaattattgtgctcactttccaaattctaatctcaaacatggcttctgttttgcctctgtctctgaagcataagac 30068848  T
Q  367 acattcaagatggcatcaaggtttaaattcaacaaagatttcttgaagatgtctcttcccgcttaa 432  Q
     ||| ||||||||| || ||   ||||||||| || || ||||||||||||||| |||| ||||||    
T  30068847 gcatacaagatggcctctagtaataaattcaagaatgacttcttgaagatgtctgttcctgcttaa 30068782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 223 - 366
Target Start/End: Complemental strand, 30157402 - 30157259
Alignment:
Q  223 aaaaagatggttgaagaaaatcctaacttatgtcaatctgatactgaatgcaaaaagaagggtagtgggaattattgtgctcgttttcctaattctgatc 322  Q
    ||||||| |||||| ||| | ||||||||||||   ||| ||  |||||||| ||| |||||||||||||||||||||||||| |||||||||||||||     
T  30157402 aaaaagaaggttgaggaacaacctaacttatgttggtctcatgatgaatgcacaaaaaagggtagtgggaattattgtgctcgctttcctaattctgata 30157303  T
Q  323 tcaaatatggtttctgttttgcctctatctctgatgcagaagac 366  Q
    |||||||||| |  |||||||||||||||||||| | |||||||    
T  30157302 tcaaatatggctggtgttttgcctctatctctgaagaagaagac 30157259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 30173550 - 30173468
Alignment:
Q  24 taataacggtatgtgtatgttgttcaaactttaattagcttcgtcatttacagtaatgttcccggtgaagaaaatagaaggag 106  Q
    |||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||| || ||||||||||||||||||    
T  30173550 taataatggtatgtgtatgttgttcaaactttaactagctttgtcatttacagtaatgttctcgatgaagaaaatagaaggag 30173468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 244 - 365
Target Start/End: Complemental strand, 30086178 - 30086057
Alignment:
Q  244 cctaacttatgtcaatctgatactgaatgcaaaaagaagggtagtgggaattattgtgctcgttttcctaattctgatctcaaatatggtttctgttttg 343  Q
    ||||||||||||   ||| || ||||||||| ||  ||||||||||| ||||| ||||||| | |||||||||||||| |||||||||| ||||||||||    
T  30086178 cctaacttatgttggtctcatgctgaatgcataagaaagggtagtggaaattactgtgctcatcttcctaattctgatatcaaatatggcttctgttttg 30086079  T
Q  344 cctctatctctgatgcagaaga 365  Q
    ||||||||||||| ||||||||    
T  30086078 cctctatctctgaagcagaaga 30086057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 30086403 - 30086324
Alignment:
Q  25 aataacggtatgtgtatgttgttcaaactttaattagcttcgtcatttacagtaatgttcccggtgaagaaaatagaagg 104  Q
    ||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| || ||||||||||||||||    
T  30086403 aataatggtatgtgtatgttgttcaaactataattagctttgtcatttacagtaatgttctcgatgaagaaaatagaagg 30086324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 30049921 - 30049828
Alignment:
Q  24 taataacggtatgtgtatgttgttcaaactttaattagcttcgtcatttacagtaatgttcccggtgaagaaaatagaaggagaagaatgtcaa 117  Q
    |||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||| |||| ||| ||||||||| || |||||||    
T  30049921 taataatggtatttgtatgttgttcaaactttaattagctttgtcatttacagtaatgtttccgatgaaaaaagtagaaggagcaggatgtcaa 30049828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 323 - 432
Target Start/End: Original strand, 30462968 - 30463077
Alignment:
Q  323 tcaaatatggtttctgttttgcctctatctctgatgcagaagacacattcaagatggcatcaaggtttaaattcaacaaagatttcttgaagatgtctct 422  Q
    |||||||||| ||||||||||||||| ||||||| ||| ||||| ||| ||||||||| || |  | ||| ||||| ||||| |||||||||||||||||    
T  30462968 tcaaatatggcttctgttttgcctctgtctctgaagcacaagacgcatacaagatggcctctacctataagttcaagaaagacttcttgaagatgtctct 30463067  T
Q  423 tcccgcttaa 432  Q
    ||||||||||    
T  30463068 tcccgcttaa 30463077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 246 - 341
Target Start/End: Complemental strand, 30172044 - 30171949
Alignment:
Q  246 taacttatgtcaatctgatactgaatgcaaaaagaagggtagtgggaattattgtgctcgttttcctaattctgatctcaaatatggtttctgttt 341  Q
    |||||||||  || || |||| ||||||| ||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||  ||||||||    
T  30172044 taacttatgcaaaactcataccgaatgcacaaagaagtgtagtgggaattattgtcctcgttttcctaattctaatctcaaatatgtcttctgttt 30171949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 30459488 - 30459587
Alignment:
Q  15 ttattcttctaataacggtatgtgtatgttgttcaaactttaattagcttcgtcatttacagtaatgttcccggtgaagaaaatagaaggagaagaatgt 114  Q
    ||||| || |||||| ||||| |||||||||||||||||||||||||||| ||  |||||||||||||| ||| |||||||| |||||| | ||||||||    
T  30459488 ttattattataataatggtatatgtatgttgttcaaactttaattagctttgttctttacagtaatgtttccgatgaagaaagtagaagcaaaagaatgt 30459587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 30069204 - 30069112
Alignment:
Q  24 taataacggtatgtgtatgttgttcaaactttaattagcttcgtcatttacagtaatgttcccggtgaagaaaatagaaggagaagaatgtcaa 117  Q
    |||||| ||||| ||||||||||||||| |||||||||||| |||||||||||||||||| ||| |||| ||| ||||||||| || |||||||    
T  30069204 taataatggtatttgtatgttgttcaaa-tttaattagctttgtcatttacagtaatgtttccgatgaacaaagtagaaggagcaggatgtcaa 30069112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 500 - 548
Target Start/End: Complemental strand, 30135765 - 30135717
Alignment:
Q  500 taaataattgggtttcttaatatccatccaaatttcaataatgatgtat 548  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30135765 taaataattgggtttcttaatatccatccaaatttcaataatgatgtat 30135717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 500 - 548
Target Start/End: Complemental strand, 30141894 - 30141846
Alignment:
Q  500 taaataattgggtttcttaatatccatccaaatttcaataatgatgtat 548  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30141894 taaataattgggtttcttaatatccatccaaatttcaataatgatgtat 30141846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 500 - 548
Target Start/End: Complemental strand, 30145316 - 30145268
Alignment:
Q  500 taaataattgggtttcttaatatccatccaaatttcaataatgatgtat 548  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30145316 taaataattgggtttcttaatatccatccaaatttcaataatgatgtat 30145268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 30083561 - 30083630
Alignment:
Q  34 atgtgtatgttgttcaaactttaattagcttcgtcatttacagtaatgttcccggtgaagaaaatagaag 103  Q
    ||||||||||||||||||||||||||| ||| |||| |||||||||||||| || | |||||||||||||    
T  30083561 atgtgtatgttgttcaaactttaattaactttgtcaattacagtaatgttctcgattaagaaaatagaag 30083630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 30080004 - 30079924
Alignment:
Q  25 aataacggtatgtgtatgttgttcaaactttaattagcttcgtcatttacagtaatgttcccggtgaagaaaatagaagga 105  Q
    ||||| |||||||| ||| ||||||||||||||||||| |  |||||||||||||||||   | |||||||||||||||||    
T  30080004 aataatggtatgtgcatgatgttcaaactttaattagcattctcatttacagtaatgttttagatgaagaaaatagaagga 30079924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 30072804 - 30072716
Alignment:
Q  15 ttattcttctaataacggtatgtgtatgttgttcaaactttaattagcttcgtcatttacagtaatgttcccggtgaagaaaatagaag 103  Q
    ||||| || |||||| ||| | ||||||||||||| |||||||||||||| |||| ||||||| || || ||| |||||||| ||||||    
T  30072804 ttattattataataatggtgtttgtatgttgttcagactttaattagctttgtcaattacagtgatattaccgatgaagaaagtagaag 30072716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 481
Target Start/End: Original strand, 30463104 - 30463144
Alignment:
Q  441 atgctagatatatgttatgcatctatgtactactttaaata 481  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  30463104 atgctagatatatattatgcatctatgtactactttaaata 30463144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 30136218 - 30136139
Alignment:
Q  24 taataacggtatgtgtatgttgttcaaactttaattagcttcgtcatttacagtaatgttcccggtgaagaaaatagaag 103  Q
    |||||| ||||||||||| |||||||| | |||||||||||  ||||||||||| || |||||  |||||||| ||||||    
T  30136218 taataatggtatgtgtatattgttcaatccttaattagctttatcatttacagtgatattcccaatgaagaaagtagaag 30136139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 30142347 - 30142268
Alignment:
Q  24 taataacggtatgtgtatgttgttcaaactttaattagcttcgtcatttacagtaatgttcccggtgaagaaaatagaag 103  Q
    |||||| ||||||||||| |||||||| | |||||||||||  ||||||||||| || |||||  |||||||| ||||||    
T  30142347 taataatggtatgtgtatattgttcaatccttaattagctttatcatttacagtgatattcccaatgaagaaagtagaag 30142268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 30145769 - 30145690
Alignment:
Q  24 taataacggtatgtgtatgttgttcaaactttaattagcttcgtcatttacagtaatgttcccggtgaagaaaatagaag 103  Q
    |||||| ||||||||||| |||||||| | |||||||||||  ||||||||||| || |||||  |||||||| ||||||    
T  30145769 taataatggtatgtgtatattgttcaatccttaattagctttatcatttacagtgatattcccaatgaagaaagtagaag 30145690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 267 - 310
Target Start/End: Original strand, 30459752 - 30459795
Alignment:
Q  267 tgaatgcaaaaagaagggtagtgggaattattgtgctcgttttc 310  Q
    |||||||| ||| |||||||||||||||||||||||||||||||    
T  30459752 tgaatgcacaaaaaagggtagtgggaattattgtgctcgttttc 30459795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 348
Target Start/End: Original strand, 12110210 - 12110316
Alignment:
Q  242 atcctaacttatgtcaatctgatactgaatgcaaaaagaagggtagtgggaattattgtgctcgttttcctaattctgatctcaaatatggtttctgttt 341  Q
    ||||||||||||||||| || || | || ||||  |||||||| |||||||| | ||||||||||| | ||||| ||||| || ||||||| |  |||||    
T  12110210 atcctaacttatgtcaaactcatgccgagtgcatcaagaagggaagtgggaacttttgtgctcgttatgctaatgctgatgtcgaatatgggtggtgttt 12110309  T
Q  342 tgcctct 348  Q
    |||||||    
T  12110310 tgcctct 12110316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 29920582 - 29920636
Alignment:
Q  52 ctttaattagcttcgtcatttacagtaatgttcccggtgaagaaaatagaaggag 106  Q
    |||||||| |||| |||||||||||||||||||||  |||||||| |||||||||    
T  29920582 ctttaatttgctttgtcatttacagtaatgttcccaatgaagaaagtagaaggag 29920636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 29927255 - 29927201
Alignment:
Q  52 ctttaattagcttcgtcatttacagtaatgttcccggtgaagaaaatagaaggag 106  Q
    |||||||| |||| |||||||||||||||||||||  |||||||| |||||||||    
T  29927255 ctttaatttgctttgtcatttacagtaatgttcccaatgaagaaagtagaaggag 29927201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 29969735 - 29969789
Alignment:
Q  52 ctttaattagcttcgtcatttacagtaatgttcccggtgaagaaaatagaaggag 106  Q
    |||||||| |||| |||||||||||||||||||||  |||||||| |||||||||    
T  29969735 ctttaatttgctttgtcatttacagtaatgttcccaatgaagaaagtagaaggag 29969789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 29976409 - 29976355
Alignment:
Q  52 ctttaattagcttcgtcatttacagtaatgttcccggtgaagaaaatagaaggag 106  Q
    |||||||| |||| |||||||||||||||||||||  |||||||| |||||||||    
T  29976409 ctttaatttgctttgtcatttacagtaatgttcccaatgaagaaagtagaaggag 29976355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 30077459 - 30077413
Alignment:
Q  18 ttcttctaataacggtatgtgtatgttgttcaaactttaattagctt 64  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||||    
T  30077459 ttcttctaataatggtatgcgtatgttgttcaaaccttaattagctt 30077413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 30133245 - 30133196
Alignment:
Q  24 taataacggtatgtgtatgttgttcaaactttaattagcttcgtcattta 73  Q
    |||||| |||||||||||||||||||||| |||||||||||  |||||||    
T  30133245 taataatggtatgtgtatgttgttcaaaccttaattagctttatcattta 30133196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 30134641 - 30134592
Alignment:
Q  24 taataacggtatgtgtatgttgttcaaactttaattagcttcgtcattta 73  Q
    |||||| |||||||||||||||||||||| |||||||||||  |||||||    
T  30134641 taataatggtatgtgtatgttgttcaaaccttaattagctttatcattta 30134592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 30144192 - 30144143
Alignment:
Q  24 taataacggtatgtgtatgttgttcaaactttaattagcttcgtcattta 73  Q
    |||||| |||||||||||||||||||||| |||||||||||  |||||||    
T  30144192 taataatggtatgtgtatgttgttcaaaccttaattagctttatcattta 30144143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 30131510 - 30131450
Alignment:
Q  36 gtgtatgttgttcaaactttaattagcttcgtcatttacagtaatgttcccggtgaagaaa 96  Q
    ||||||||||||||||| |||||||||||  ||||||||||| || |||||  ||||||||    
T  30131510 gtgtatgttgttcaaacgttaattagctttatcatttacagtgatattcccaatgaagaaa 30131450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 500 - 548
Target Start/End: Original strand, 30463139 - 30463187
Alignment:
Q  500 taaataattgggtttcttaatatccatccaaatttcaataatgatgtat 548  Q
    ||||||| | || |||||||| |||||||||||||||||||||||||||    
T  30463139 taaataaataggcttcttaatttccatccaaatttcaataatgatgtat 30463187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 548
Target Start/End: Original strand, 29921040 - 29921103
Alignment:
Q  487 ctttgtttccaactaaataattgggtttctta-atatccatccaaatttcaa-taatgatgtat 548  Q
    ||||||||||||||||  || ||| ||||||| ||||||||||||||||||| |||||||||||    
T  29921040 ctttgtttccaactaatcaaatggatttcttagatatccatccaaatttcaattaatgatgtat 29921103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 548
Target Start/End: Complemental strand, 29926797 - 29926734
Alignment:
Q  487 ctttgtttccaactaaataattgggtttctta-atatccatccaaatttcaa-taatgatgtat 548  Q
    ||||||||||||||||  || ||| ||||||| ||||||||||||||||||| |||||||||||    
T  29926797 ctttgtttccaactaatcaaatggatttcttagatatccatccaaatttcaattaatgatgtat 29926734  T

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Target: chr3; HSP #52
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 548
Target Start/End: Original strand, 29970193 - 29970256
Alignment:
Q  487 ctttgtttccaactaaataattgggtttctta-atatccatccaaatttcaa-taatgatgtat 548  Q
    ||||||||||||||||  || ||| ||||||| ||||||||||||||||||| |||||||||||    
T  29970193 ctttgtttccaactaatcaaatggatttcttagatatccatccaaatttcaattaatgatgtat 29970256  T

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Target: chr3; HSP #53
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 548
Target Start/End: Complemental strand, 29975951 - 29975888
Alignment:
Q  487 ctttgtttccaactaaataattgggtttctta-atatccatccaaatttcaa-taatgatgtat 548  Q
    ||||||||||||||||  || ||| ||||||| ||||||||||||||||||| |||||||||||    
T  29975951 ctttgtttccaactaatcaaatggatttcttagatatccatccaaatttcaattaatgatgtat 29975888  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 226 - 354
Target Start/End: Complemental strand, 6803110 - 6802982
Alignment:
Q  226 aagatggttgaagaaaatcctaacttatgtcaatctgatactgaatgcaaaaagaagggtagtgggaattattgtgctcgttttcctaattctgatctca 325  Q
    ||||||||||| ||| |||||||||||||||| ||| || |||| ||||  ||||| || ||||||| || ||| ||||||| |||||||  |||| ||     
T  6803110 aagatggttgaggaacatcctaacttatgtcagtctcatgctgattgcacgaagaaaggaagtgggagtttttgcgctcgttatcctaatcttgatatcg 6803011  T
Q  326 aatatggtttctgttttgcctctatctct 354  Q
    ||||||| |  ||||||||||||| ||||    
T  6803010 aatatggatggtgttttgcctctaactct 6802982  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 365
Target Start/End: Complemental strand, 12837641 - 12837543
Alignment:
Q  267 tgaatgcaaaaagaagggtagtgggaattattgtgctcgttttcctaattctgatctcaaatatggtttctgttttgcctctatctctgatgcagaaga 365  Q
    ||||||||| |||||||| |||||||  | ||| ||||||| |||||||||||||  |||| |||| |  |||||||| ||| ||||||| ||| ||||    
T  12837641 tgaatgcaacaagaagggaagtgggagcttttgcgctcgttctcctaattctgataacaaaaatggctggtgttttgcatctttctctgaggcacaaga 12837543  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 332
Target Start/End: Original strand, 7947056 - 7947162
Alignment:
Q  226 aagatggttgaagaaaatcctaacttatgtcaatctgatactgaatgcaaaaagaagggtagtgggaattattgtgctcgttttcctaattctgatctca 325  Q
    |||||||||||  || || ||||||||||||||||| || |||| ||||  ||||| || ||||| |  | ||||||||||| ||||||| ||||| |||    
T  7947056 aagatggttgagaaacatgctaacttatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcctaatcctgatatca 7947155  T
Q  326 aatatgg 332  Q
    |||||||    
T  7947156 aatatgg 7947162  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 332
Target Start/End: Original strand, 7941505 - 7941611
Alignment:
Q  226 aagatggttgaagaaaatcctaacttatgtcaatctgatactgaatgcaaaaagaagggtagtgggaattattgtgctcgttttcctaattctgatctca 325  Q
    |||||||||||  || || ||||||||||||||||| || |||| ||||  ||||| || ||||| |  | ||||||||||| ||||||| ||||| ||     
T  7941505 aagatggttgagaaacatgctaacttatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcctaatcctgatatcg 7941604  T
Q  326 aatatgg 332  Q
    |||||||    
T  7941605 aatatgg 7941611  T

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