View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20514_low_1 (Length: 1030)

Name: NF20514_low_1
Description: NF20514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20514_low_1
NF20514_low_1
[»] chr6 (18 HSPs)
chr6 (794-962)||(26651385-26651555)
chr6 (794-962)||(26757353-26757523)
chr6 (802-923)||(26966511-26966633)
chr6 (802-956)||(26631912-26632072)
chr6 (802-956)||(26737887-26738048)
chr6 (320-393)||(26641885-26641958)
chr6 (320-393)||(26747851-26747924)
chr6 (736-806)||(26631808-26631878)
chr6 (736-806)||(26737783-26737853)
chr6 (736-806)||(26890799-26890869)
chr6 (736-806)||(27713827-27713897)
chr6 (742-806)||(27422278-27422342)
chr6 (310-393)||(27649471-27649554)
chr6 (802-875)||(27422170-27422244)
chr6 (976-1023)||(26632059-26632106)
chr6 (976-1023)||(26738035-26738082)
chr6 (736-789)||(27651939-27651991)
chr6 (736-775)||(26854011-26854050)
[»] scaffold0349 (1 HSPs)
scaffold0349 (736-806)||(18047-18117)
[»] chr8 (2 HSPs)
chr8 (305-393)||(29268896-29268985)
chr8 (736-806)||(29269693-29269763)
[»] scaffold0003 (2 HSPs)
scaffold0003 (742-806)||(65021-65085)
scaffold0003 (802-875)||(65119-65193)


Alignment Details
Target: chr6 (Bit Score: 128; Significance: 1e-65; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 794 - 962
Target Start/End: Original strand, 26651385 - 26651555
Alignment:
Q  794 atgtatgtatgatgtgaatttccatttctcaaataaagtgtttgattattaattacaactagactttgaatattctcctaaa--nnnnnnnngtaaatat 891  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||    
T  26651385 atgtatgtatgatgtgaacttccatttctcaaataaagtgtttgattattaattacaactagactttgaatattctcctaaatttgttttttgtaaatat 26651484  T
Q  892 tatgttgtaatagctttttaaatataattataaggcaacatctcataatatatggtacgtaacactctttc 962  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26651485 tatattgtaatagctttttaaatataattataaggcaacatctcataatatatggtacgtaacactctttc 26651555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 794 - 962
Target Start/End: Original strand, 26757353 - 26757523
Alignment:
Q  794 atgtatgtatgatgtgaatttccatttctcaaataaagtgtttgattattaattacaactagactttgaatattctcctaaa--nnnnnnnngtaaatat 891  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||    
T  26757353 atgtatgtatgatgtgaacttccatttctcaaataaagtgtttgattattaattacaactagactttgaatattctcctaaatttgttttttgtaaatat 26757452  T
Q  892 tatgttgtaatagctttttaaatataattataaggcaacatctcataatatatggtacgtaacactctttc 962  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26757453 tatattgtaatagctttttaaatataattataaggcaacatctcataatatatggtacgtaacactctttc 26757523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 802 - 923
Target Start/End: Original strand, 26966511 - 26966633
Alignment:
Q  802 atgatgtgaatttccatttctcaaataaagtgtttgattattaattacaactagactttgaatattctcct-aaannnnnnnngtaaatattatgttgta 900  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||        ||||||||||| || ||    
T  26966511 atgatgtgaacttccatttctcaaatatagtgtttgattattaattacaactagactttgaatattctcctaaaaccagtattgtaaatattatattata 26966610  T
Q  901 atagctttttaaatataattata 923  Q
    |||| ||||||||||||||||||    
T  26966611 atagttttttaaatataattata 26966633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 802 - 956
Target Start/End: Original strand, 26631912 - 26632072
Alignment:
Q  802 atgatgtgaatttccatttctcaaataaagtgtttgattattaattacaactagactttgaatattctcct------aaannnnnnnngtaaatattatg 895  Q
    ||||||| || |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |      |||        ||||| |||||     
T  26631912 atgatgttaacttccatttctcaaataaagtgtttgattattaattataactagacattgaatattctcttaaaaaaaaaaaagtattgtaaacattata 26632011  T
Q  896 ttgtaatagctttttaaatataattataaggcaacatctcataatatatggtacgtaacac 956  Q
    || ||||| ||||||||||||| ||||| | || |||||||||||||||||||||||||||    
T  26632012 ttataatatctttttaaatatagttataggacatcatctcataatatatggtacgtaacac 26632072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 802 - 956
Target Start/End: Original strand, 26737887 - 26738048
Alignment:
Q  802 atgatgtgaatttccatttctcaaataaagtgtttgattattaattacaactagactttgaatattctcct-------aaannnnnnnngtaaatattat 894  Q
    ||||||| || |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |       |||        ||||| |||||    
T  26737887 atgatgttaacttccatttctcaaataaagtgtttgattattaattataactagacattgaatattctcttaaaaaaaaaaaaagtattgtaaacattat 26737986  T
Q  895 gttgtaatagctttttaaatataattataaggcaacatctcataatatatggtacgtaacac 956  Q
     || ||||| ||||||||||||| ||||| | || |||||||||||||||||||||||||||    
T  26737987 attataatatctttttaaatatagttataggacatcatctcataatatatggtacgtaacac 26738048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 320 - 393
Target Start/End: Complemental strand, 26641958 - 26641885
Alignment:
Q  320 aattgtgaataacatgaacagattgtgaataaagaaaatatattgcctaacccatagaatcagatcatggtaat 393  Q
    ||||||||||||||||||||| |||||||||||| |||| || ||||||||||| |||||||||||||||||||    
T  26641958 aattgtgaataacatgaacaggttgtgaataaagcaaatttactgcctaacccaaagaatcagatcatggtaat 26641885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 320 - 393
Target Start/End: Complemental strand, 26747924 - 26747851
Alignment:
Q  320 aattgtgaataacatgaacagattgtgaataaagaaaatatattgcctaacccatagaatcagatcatggtaat 393  Q
    ||||||||||||||||||||| |||||||||||| |||| || ||||||||||| |||||||||||||||||||    
T  26747924 aattgtgaataacatgaacaggttgtgaataaagcaaatttactgcctaacccaaagaatcagatcatggtaat 26747851  T

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Target: chr6; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 736 - 806
Target Start/End: Original strand, 26631808 - 26631878
Alignment:
Q  736 aaacacttttctgccaaatcagttttctgagacagaacttttgtcgcagcaacagcaaatgtatgtatgat 806  Q
    |||||||||||| ||||||| ||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  26631808 aaacacttttctcccaaatctgttttctgagacagaacttgtgtcgcataaacagcaaatgtatgtatgat 26631878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 736 - 806
Target Start/End: Original strand, 26737783 - 26737853
Alignment:
Q  736 aaacacttttctgccaaatcagttttctgagacagaacttttgtcgcagcaacagcaaatgtatgtatgat 806  Q
    |||||||||||| ||||||| ||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  26737783 aaacacttttctcccaaatctgttttctgagacagaacttgtgtcgcataaacagcaaatgtatgtatgat 26737853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 736 - 806
Target Start/End: Original strand, 26890799 - 26890869
Alignment:
Q  736 aaacacttttctgccaaatcagttttctgagacagaacttttgtcgcagcaacagcaaatgtatgtatgat 806  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||| || || |||||||||||||    
T  26890799 aaacacttttctgccaaatcagttttctgagacagaacttatgtagcagcagcaacacatgtatgtatgat 26890869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 736 - 806
Target Start/End: Complemental strand, 27713897 - 27713827
Alignment:
Q  736 aaacacttttctgccaaatcagttttctgagacagaacttttgtcgcagcaacagcaaatgtatgtatgat 806  Q
    |||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| || |||||||||||||    
T  27713897 aaacacttctctgccaaatcagttttctgagacagaacttgtgtagcagcaacaacatatgtatgtatgat 27713827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 742 - 806
Target Start/End: Complemental strand, 27422342 - 27422278
Alignment:
Q  742 ttttctgccaaatcagttttctgagacagaacttttgtcgcagcaacagcaaatgtatgtatgat 806  Q
    ||||||||||||||| |||||||  ||||||||| ||||||||||||| ||||||||||||||||    
T  27422342 ttttctgccaaatcatttttctgcaacagaacttgtgtcgcagcaacaacaaatgtatgtatgat 27422278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 310 - 393
Target Start/End: Original strand, 27649471 - 27649554
Alignment:
Q  310 accttaatccaattgtgaataacatgaacagattgtgaataaagaaaatatattgcctaacccatagaatcagatcatggtaat 393  Q
    |||||| || |||||||||||||| ||||||||| ||||||||| |||| || ||||||||  |||||||||||| ||||||||    
T  27649471 accttattctaattgtgaataacaggaacagattatgaataaagcaaatttactgcctaacatatagaatcagataatggtaat 27649554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 802 - 875
Target Start/End: Complemental strand, 27422244 - 27422170
Alignment:
Q  802 atgatgtgaatttccatttctcaaataaa-gtgtttgattattaattacaactagactttgaatattctcctaaa 875  Q
    |||||||||| |  ||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||| ||||    
T  27422244 atgatgtgaactaacatttcttaaataaaagtgtttgatttttaattacaactagactttgaatattctcataaa 27422170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 976 - 1023
Target Start/End: Original strand, 26632059 - 26632106
Alignment:
Q  976 atggtacgtaacacagtagctggacaaaaacaccatcaatcctacaaa 1023  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||    
T  26632059 atggtacgtaacacagtagttggacataaacaccatcaatcctacaaa 26632106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 976 - 1023
Target Start/End: Original strand, 26738035 - 26738082
Alignment:
Q  976 atggtacgtaacacagtagctggacaaaaacaccatcaatcctacaaa 1023  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||    
T  26738035 atggtacgtaacacagtagttggacataaacaccatcaatcctacaaa 26738082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 736 - 789
Target Start/End: Complemental strand, 27651991 - 27651939
Alignment:
Q  736 aaacacttttctgccaaatcagttttctgagacagaacttttgtcgcagcaaca 789  Q
    |||||||||||||||||||||||||| ||||||||||||| | | |||||||||    
T  27651991 aaacacttttctgccaaatcagtttt-tgagacagaacttgtttagcagcaaca 27651939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 736 - 775
Target Start/End: Original strand, 26854011 - 26854050
Alignment:
Q  736 aaacacttttctgccaaatcagttttctgagacagaactt 775  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  26854011 aaacaattttctgccaagtcagttttctgagacagaactt 26854050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 736 - 806
Target Start/End: Original strand, 18047 - 18117
Alignment:
Q  736 aaacacttttctgccaaatcagttttctgagacagaacttttgtcgcagcaacagcaaatgtatgtatgat 806  Q
    |||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| || |||||||||||||    
T  18047 aaacacttctctgccaaatcagttttctgagacagaacttgtgtagcagcaacaacatatgtatgtatgat 18117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 305 - 393
Target Start/End: Original strand, 29268896 - 29268985
Alignment:
Q  305 tatagaccttaat-ccaattgtgaataacatgaacagattgtgaataaagaaaatatattgcctaacccatagaatcagatcatggtaat 393  Q
    ||||||||||| | ||||| |||||||||| ||||||||||||||||||  |||| || |||| ||||||||||||||||||||||||||    
T  29268896 tatagaccttatttccaatcgtgaataacaggaacagattgtgaataaatcaaatttactgccaaacccatagaatcagatcatggtaat 29268985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 736 - 806
Target Start/End: Complemental strand, 29269763 - 29269693
Alignment:
Q  736 aaacacttttctgccaaatcagttttctgagacagaacttttgtcgcagcaacagcaaatgtatgtatgat 806  Q
    |||||||| |||||||||||| ||||| |||||||||||| ||| ||||||||| || ||||||| |||||    
T  29269763 aaacacttctctgccaaatcacttttcagagacagaacttgtgtagcagcaacaacatatgtatgcatgat 29269693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 742 - 806
Target Start/End: Original strand, 65021 - 65085
Alignment:
Q  742 ttttctgccaaatcagttttctgagacagaacttttgtcgcagcaacagcaaatgtatgtatgat 806  Q
    ||||||||||||||| |||||||  ||||||||| ||||||||||||| ||||||||||||||||    
T  65021 ttttctgccaaatcatttttctgcaacagaacttgtgtcgcagcaacaacaaatgtatgtatgat 65085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 802 - 875
Target Start/End: Original strand, 65119 - 65193
Alignment:
Q  802 atgatgtgaatttccatttctcaaataaa-gtgtttgattattaattacaactagactttgaatattctcctaaa 875  Q
    |||||||||| |  ||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||| ||||    
T  65119 atgatgtgaactaacatttcttaaataaaagtgtttgatttttaattacaactagactttgaatattctcataaa 65193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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