View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20514_low_10 (Length: 490)
Name: NF20514_low_10
Description: NF20514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20514_low_10 |
 | |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 259 - 466
Target Start/End: Original strand, 29120599 - 29120806
Alignment:
| Q |
259 |
aaacttctgagaaagcctcttgcgagattcaaatgtctttccaaacaccattgatcactcatttctaaccccaacttcacaaaacttcaccttaacggat |
358 |
Q |
| |
|
||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29120599 |
aaacttccgataaagcctctcgcgagattcaaatgtctttccaaacaccattgatcactcatttctaaccccaacttcacaaaacttcaccttaacagat |
29120698 |
T |
|
| Q |
359 |
cacccaaaaacccacatgttgtaattatatcactcaattctatagacgaagaggacaacagaaattgggaagttactcatttctcaatccaatgatgatt |
458 |
Q |
| |
|
||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29120699 |
cacccaaaagcccacatgtcgtaattacatcactcaattctatagacgaagaggacaacaaaaattgggaagttactcatttctcaatcaaatgatgatt |
29120798 |
T |
|
| Q |
459 |
tttatcat |
466 |
Q |
| |
|
|||||||| |
|
|
| T |
29120799 |
tttatcat |
29120806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 446
Target Start/End: Original strand, 31668969 - 31669102
Alignment:
| Q |
313 |
tcactcatttctaaccccaacttcacaaaacttcaccttaacggatcacccaaaaacccacatgttgtaattatatcactcaattctatagacgaagagg |
412 |
Q |
| |
|
|||| ||||||| | ||||| |||||||||||||||||| | |||||| |||||| ||||||| || |||| || |||| |||| ||||| | |||| |
|
|
| T |
31668969 |
tcacacatttctgaacccaagttcacaaaacttcaccttgagagatcacagaaaaacacacatgtcgtgattacattactccattccttagacaacgagg |
31669068 |
T |
|
| Q |
413 |
acaacagaaattgggaagttactcatttctcaat |
446 |
Q |
| |
|
| | |||||||| |||||| || ||||||||| |
|
|
| T |
31669069 |
gcgaaggaaattggaaagttagtcctttctcaat |
31669102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 390
Target Start/End: Original strand, 29130202 - 29130322
Alignment:
| Q |
270 |
aaagcctcttgcgagattcaaatgtctttccaaacaccattgatcactcatttctaaccccaacttcacaaaacttcaccttaacggatcacccaaaaac |
369 |
Q |
| |
|
||||||| ||| |||||||||| | |||| |||||| ||| |||| |||||| | ||||| |||| ||||||||||||| | ||||| |||||||| |
|
|
| T |
29130202 |
aaagccttttgtgagattcaaacatgtttctaaacactattattcacagatttctgaacccaaattcaaaaaacttcaccttgagagatcatccaaaaac |
29130301 |
T |
|
| Q |
370 |
ccacatgttgtaattatatca |
390 |
Q |
| |
|
||||| | ||||||| |||| |
|
|
| T |
29130302 |
acacatatagtaattacatca |
29130322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 271 - 351
Target Start/End: Original strand, 11635 - 11715
Alignment:
| Q |
271 |
aagcctcttgcgagattcaaatgtctttccaaacaccattgatcactcatttctaaccccaacttcacaaaacttcacctt |
351 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||| || ||||||||||| ||||| | |||||||||||||||||| |
|
|
| T |
11635 |
aagcctcttgcgagattcaaatgtgtatccaaacactataattcactcatttccaaccctgaattcacaaaacttcacctt |
11715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 351
Target Start/End: Original strand, 3836126 - 3836206
Alignment:
| Q |
271 |
aagcctcttgcgagattcaaatgtctttccaaacaccattgatcactcatttctaaccccaacttcacaaaacttcacctt |
351 |
Q |
| |
|
||||||||||| |||||||||||| | ||||||||| || ||||||||||| |||| | |||||||||||||||||| |
|
|
| T |
3836126 |
aagcctcttgcaagattcaaatgtgtatccaaacactataattcactcatttccgaccctgaattcacaaaacttcacctt |
3836206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University