View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20514_low_14 (Length: 357)
Name: NF20514_low_14
Description: NF20514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20514_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 113 - 339
Target Start/End: Complemental strand, 47365736 - 47365510
Alignment:
| Q |
113 |
gtattaaatatgtgaaatttgcatataaaattctagtatctgttcctaagttcaccttcagtttgtctgtccttaattgtactatgtttgtcacaaaaat |
212 |
Q |
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| T |
47365736 |
gtattaaatatgtgaaatttgcatataaaattctagtatctgttcctaagttcaccttcagtttgtctgtccttaattgtactatgtttgtcacaaaaat |
47365637 |
T |
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| Q |
213 |
aattgagcatttagcagaaggggaaaactatgaaaaaagggtttaagttgatacaaatgaaaggtgaaagtgaatacaaaactcactatgtagcctctaa |
312 |
Q |
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| T |
47365636 |
aattgagcatttagcagaaggggaaaactatgaaaaaagggtttaagttgatacaaatgaaaggtaaaagtgaatacaaaactcactatgtagcctctaa |
47365537 |
T |
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| Q |
313 |
atgttgtttgaattttgatagctgaag |
339 |
Q |
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| T |
47365536 |
atgttgtttgaattttgatagctgaag |
47365510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 47365839 - 47365793
Alignment:
| Q |
10 |
aagaaaatagtaaggtgacttcagtttgtcaatctaatccactaaag |
56 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47365839 |
aagaatatagtaaggtgacttcagtttgtcaatctaatccactaaag |
47365793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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