View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20514_low_17 (Length: 332)
Name: NF20514_low_17
Description: NF20514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20514_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 25579826 - 25579689
Alignment:
| Q |
24 |
tcggcatcataaaatcataacccttccctaccttccttttcaaaactactataccaaaacacagggtcgaaaaaaggaacatcaatgcattaaaccagcc |
123 |
Q |
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| T |
25579826 |
tcggcatcataaaatcataacccttccctaccttccttttcaaaactactataccaaaacacagggtcgaaaaaaggaacatcaatgcattaaaccagcc |
25579727 |
T |
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| Q |
124 |
atcaatgcgagtaaagtcctagaattgcagggtgatac |
161 |
Q |
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| T |
25579726 |
atcaatgcgagtaaagtcctagaattgcagggtgatac |
25579689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 183 - 316
Target Start/End: Complemental strand, 25579691 - 25579558
Alignment:
| Q |
183 |
tacacatgataatggtaattcatgatatcagttagtgtaatattcatctttacttcttgttttttaatcaatgagatgtctaggattcgaatcataaccc |
282 |
Q |
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| T |
25579691 |
tacacatgataatggtaattcatgatatcagttggtgtaatattcatctttacttcttgttttttaatcaatgagatgtctagggttcgaatcataaccc |
25579592 |
T |
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| Q |
283 |
ctgcatatataatgtaatgtccctagcaactgag |
316 |
Q |
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| T |
25579591 |
ctgcatatataatgtaatgtacctagcaactgag |
25579558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 326
Target Start/End: Complemental strand, 23393698 - 23393651
Alignment:
| Q |
279 |
acccctgcatatataatgtaatgtccctagcaactgagttcatctcac |
326 |
Q |
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| T |
23393698 |
acccctgcatataaaatgtgatatccctaccaactgagttcatctcac |
23393651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 1836573 - 1836516
Alignment:
| Q |
259 |
tgtctaggattcgaatcataacccctgcatatataatgtaatgtccctagcaactgag |
316 |
Q |
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| T |
1836573 |
tgtctagggttcgaatcttgacccctgcatataatatgtaatatccctaccaactgag |
1836516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 318
Target Start/End: Complemental strand, 7948436 - 7948383
Alignment:
| Q |
265 |
ggattcgaatcataacccctgcatatataatgtaatgtccctagcaactgagtt |
318 |
Q |
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| T |
7948436 |
ggattcgaaccccaacccctgcatatattatgtaatgtctctatcaactgagtt |
7948383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 316
Target Start/End: Complemental strand, 46206627 - 46206590
Alignment:
| Q |
279 |
acccctgcatatataatgtaatgtccctagcaactgag |
316 |
Q |
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| T |
46206627 |
acccctgcatatataatgcaatgtccctaccaactgag |
46206590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 40706851 - 40706811
Alignment:
| Q |
278 |
aacccctgcatatataatgtaatgtccctagcaactgagtt |
318 |
Q |
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| T |
40706851 |
aacccctacatatataatgtaatgtccctaccaattgagtt |
40706811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 45118689 - 45118653
Alignment:
| Q |
280 |
cccctgcatatataatgtaatgtccctagcaactgag |
316 |
Q |
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||||||||||||||||| |||||||||| |||||||| |
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| T |
45118689 |
cccctgcatatataatgcaatgtccctaccaactgag |
45118653 |
T |
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