View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20514_low_24 (Length: 267)
Name: NF20514_low_24
Description: NF20514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20514_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 12004892 - 12005139
Alignment:
| Q |
1 |
cttttctcatctcttgctgtaagcacaactttgattccagctgaagctaattgccttactatctctaatccaattcctttgttcgatccagtcaccgctg |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12004892 |
cttttctcatctcttgctgtaagcaccactttgattccagctgaagctaattgccttactatctctaatccaattcctttgttcgatccagtcaccactg |
12004991 |
T |
|
| Q |
101 |
cgtacctgagaaagaggtagaacacacaaggattagaattatatcaactagacacaaaaacatggttagatatgtcaacatcttcttattgcga-ggtca |
199 |
Q |
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| ||||||||||||||| ||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
12004992 |
catacctgagaaagaggaagaacacacaaggattaga---atatcaataagactcaaaaacatggttggatatgtcaacatcttcttattgcgagggtca |
12005088 |
T |
|
| Q |
200 |
ggtaactcaactggtttgagctaaaagttacaggaattggaggtcccagat |
250 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12005089 |
ggtaactcaactggtttgagctaagagttacaggaattggaggtcccagat |
12005139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 11980143 - 11980243
Alignment:
| Q |
1 |
cttttctcatctcttgctgtaagcacaactttgattccagctgaagctaattgccttactatctctaatccaattcctttgttcgatccagtcaccgctg |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |
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| T |
11980143 |
cttttctcatctcttgctgtaagcaccactttgattccagctgaagctaattgccttactatctctaatccaattcctttgtttgatcctgtcaccactg |
11980242 |
T |
|
| Q |
101 |
c |
101 |
Q |
| |
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| |
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| T |
11980243 |
c |
11980243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 11999674 - 11999789
Alignment:
| Q |
1 |
cttttctcatctcttgctgtaagcacaactttgattccagctgaagctaattgccttactatctctaatccaattcctttgttcgatccagtcaccgctg |
100 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||| ||| |
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| T |
11999674 |
cttttctcatctcttgctgtcagcacaactttgattccatctgaagctaactgccttactatctcaaatccaattcctttgtttgatcctgtcaccactg |
11999773 |
T |
|
| Q |
101 |
cgtacctgagaaagag |
116 |
Q |
| |
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| |||||||| ||||| |
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| T |
11999774 |
catacctgaggaagag |
11999789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 11975068 - 11975176
Alignment:
| Q |
1 |
cttttctcatctcttgctgtaagcacaactttgattccagctgaagctaattgccttactatctctaatccaattcctttgttcgatccagtcaccgctg |
100 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| || || |||||||||||||| | |||||||||| ||| |
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| T |
11975068 |
cttttctcatctcttgctgtaagcaccactttgattccagctgaagctaattgcttaactatttcaaacccaattcctttgtttgctccagtcaccactg |
11975167 |
T |
|
| Q |
101 |
cgtacctga |
109 |
Q |
| |
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| ||||||| |
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| T |
11975168 |
catacctga |
11975176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 11984500 - 11984600
Alignment:
| Q |
1 |
cttttctcatctcttgctgtaagcacaactttgattccagctgaagctaattgccttactatctctaatccaattcctttgttcgatccagtcaccgctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| || |||||||||||||| | |||||||||| ||| |
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| T |
11984500 |
cttttctcatctcttgctgtaagcacaactttgattccagctgaagctaactgcttaactatctcaaacccaattcctttgtttgctccagtcaccactg |
11984599 |
T |
|
| Q |
101 |
c |
101 |
Q |
| |
|
| |
|
|
| T |
11984600 |
c |
11984600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 12014559 - 12014674
Alignment:
| Q |
1 |
cttttctcatctcttgctgtaagcacaactttgattccagctgaagctaattgccttactatctctaatccaattcctttgttcgatccagtcaccgctg |
100 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| | |||||||| |||||||| |||||||| | |||||||||| ||| |
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| T |
12014559 |
cttttctcatctcttgcagtaagcaccactttgattccagctgaagctaactgcttaactatctcaaatccaatccctttgtttgctccagtcaccactg |
12014658 |
T |
|
| Q |
101 |
cgtacctgagaaagag |
116 |
Q |
| |
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| |||||||| ||||| |
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| T |
12014659 |
catacctgaggaagag |
12014674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 11992007 - 11992089
Alignment:
| Q |
1 |
cttttctcatctcttgctgtaagcacaactttgattccagctgaagctaattgccttactatctctaatccaattcctttgtt |
83 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| ||||||||||||| ||| ||||||||||||| |||||||||||||| |
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| T |
11992007 |
cttttctcatctcttgatgtaagcaccactttgattacagctgaagctaactgctttactatctctaacccaattcctttgtt |
11992089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 12009984 - 12010098
Alignment:
| Q |
1 |
cttttctcatctcttgctgtaagcacaactttgattccagctgaagctaattgccttactatctctaatccaattcctttgttcgatccagtcaccgctg |
100 |
Q |
| |
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|||||||||||||||| ||| ||||| |||||||||| |||||||||||| || | ||||||||||| |||||||||||||| | ||| |||||| ||| |
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| T |
12009984 |
cttttctcatctcttgatgtgagcaccactttgattctagctgaagctaactgtttaactatctctaacccaattcctttgtttgctcctgtcaccactg |
12010083 |
T |
|
| Q |
101 |
cgtacctgagaaaga |
115 |
Q |
| |
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| |||||||| |||| |
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|
| T |
12010084 |
catacctgaggaaga |
12010098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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