View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20514_low_28 (Length: 220)
Name: NF20514_low_28
Description: NF20514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20514_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 43472316 - 43472114
Alignment:
| Q |
1 |
aagattcacttgatctaagttttctaaacacataattcactaaattaagcactatacagttaaaaaagcacacaatataagaaatacaaa-tgcatctgt |
99 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
43472316 |
aagattcacttgatctaagttttctaaacacataattcactaaattaagcactatacagtaaaaaaagcacacaatataagaaatacaaacggcatctgt |
43472217 |
T |
|
| Q |
100 |
aaactaaacataaatgtagaaattcaaaactcacagatactagaaatgatatataaaatatgcataatgcttaccnnnnnnncttattgtcttgagtact |
199 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43472216 |
aaaccaaacataaatgtagaaattcaaaactcacagatactagaaatgatatataaaatatgcataatgcttacctaaaaaacttattgtcttgagtact |
43472117 |
T |
|
| Q |
200 |
aat |
202 |
Q |
| |
|
||| |
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|
| T |
43472116 |
aat |
43472114 |
T |
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