View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20514_low_3 (Length: 624)

Name: NF20514_low_3
Description: NF20514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20514_low_3
NF20514_low_3
[»] chr4 (1 HSPs)
chr4 (1-618)||(30517658-30518274)
[»] chr2 (2 HSPs)
chr2 (491-618)||(38895856-38895983)
chr2 (492-618)||(42898298-42898424)
[»] chr7 (2 HSPs)
chr7 (492-618)||(44150800-44150926)
chr7 (491-616)||(40749392-40749517)
[»] chr8 (2 HSPs)
chr8 (491-618)||(5788722-5788849)
chr8 (507-618)||(33186735-33186846)
[»] chr1 (8 HSPs)
chr1 (491-618)||(4160377-4160504)
chr1 (492-618)||(36989340-36989466)
chr1 (492-618)||(28496106-28496232)
chr1 (510-618)||(31644076-31644184)
chr1 (492-618)||(12804511-12804637)
chr1 (510-618)||(42287117-42287225)
chr1 (491-618)||(12774937-12775064)
chr1 (491-618)||(50788818-50788945)
[»] chr5 (1 HSPs)
chr5 (548-619)||(1983175-1983246)
[»] chr3 (2 HSPs)
chr3 (548-596)||(12106124-12106172)
chr3 (548-596)||(46987775-46987823)


Alignment Details
Target: chr4 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 1 - 618
Target Start/End: Original strand, 30517658 - 30518274
Alignment:
Q  1 gtaacatgagtacggcataaggatttgtacaaacaagcctatatatagtggttggttaacaacctcaaactagtgtcaaaataaaacaaaaataatactc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30517658 gtaacatgagtacggcataaggatttgtacaaacaagcctatatatagtggttggttaacaacctcaaactagtgtcaaaataaaacaaaaataatactc 30517757  T
Q  101 aaatatatatctttagtgagtgaggttaactgagataactccaaaccatggattttgtcgtttagggcaaaaactgcaaaaaggcttatcgaaaaacttg 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30517758 aaatatatatctatagtgagtgaggttaactgagataactccaaaccatggattttgtcgtttagggcaaaaactgcaaaaaggcttatc-aaaaacttg 30517856  T
Q  201 tgtcttaattaatctttgatcaactccttaataatttgtttgaactaattaacctcattcactttttattctcataaaagccaaataggcaaaaacaaca 300  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30517857 tgtgttaattaatctttgatcaactccttcataatttgtttgaactaattaacctcattcactttttattctcataaaagccaaataggcaaaaacaaca 30517956  T
Q  301 tattattcaagttacctaaccacctataaacttgatccttatatcagatatataattttttggtaaactaagatatctccgc-aacatctgttgagacta 399  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  30517957 tattattcaagttacctaaccacctttaaactcgatccttatatcagatatataattttttggtaaactaagatatctccgcaaacatctgctgagacta 30518056  T
Q  400 attcctcgagtcactgagatccttatatcatatataccgattacaacgatgtgagcagaataacatagagatggatggataggcagttagtttaccttga 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||    
T  30518057 attcctcgagtcactgagatccttatatcatatataccgattacaacgatgtgatcagaataacatagagatggatggataggcagtta-attaccttga 30518155  T
Q  500 aaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagcacttctca 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30518156 aaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagcacttctca 30518255  T
Q  600 cacttccacttcttctcac 618  Q
    |||||||||||||| ||||    
T  30518256 cacttccacttcttttcac 30518274  T

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Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 491 - 618
Target Start/End: Original strand, 38895856 - 38895983
Alignment:
Q  491 ttaccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgag 590  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||| ||||||||||| || ||||||||||||  |||||||    
T  38895856 ttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgag 38895955  T
Q  591 cacttctcacacttccacttcttctcac 618  Q
    ||||||||||||||||||||||||||||    
T  38895956 cacttctcacacttccacttcttctcac 38895983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 492 - 618
Target Start/End: Complemental strand, 42898424 - 42898298
Alignment:
Q  492 taccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagc 591  Q
    |||||||| ||||  ||||||||||||||| |||||||||| || ||||| ||||| |||||||||||||| ||||| ||||| |||||    || ||||    
T  42898424 taccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagc 42898325  T
Q  592 acttctcacacttccacttcttctcac 618  Q
    |||| ||||| ||||||||||||||||    
T  42898324 acttgtcacatttccacttcttctcac 42898298  T

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Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 492 - 618
Target Start/End: Original strand, 44150800 - 44150926
Alignment:
Q  492 taccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagc 591  Q
    ||||| ||||| || |||||||| |||||||||||||| ||||||||||| |||||   |||||| ||||||||||| ||||||||||| | ||| ||||    
T  44150800 tacctagaaaatatggttccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagc 44150899  T
Q  592 acttctcacacttccacttcttctcac 618  Q
    |||| ||||| ||||| ||||||||||    
T  44150900 acttgtcacatttccatttcttctcac 44150926  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 491 - 616
Target Start/End: Complemental strand, 40749517 - 40749392
Alignment:
Q  491 ttaccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgag 590  Q
    ||||||||| ||||  || ||||| ||||| || ||||||||||||||||| ||||| | ||||||||||||||| || || || |||||    || ||     
T  40749517 ttaccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttggaa 40749418  T
Q  591 cacttctcacacttccacttcttctc 616  Q
    ||||| ||||||||||| ||||||||    
T  40749417 cacttatcacacttccatttcttctc 40749392  T

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Target: chr8 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 491 - 618
Target Start/End: Original strand, 5788722 - 5788849
Alignment:
Q  491 ttaccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgag 590  Q
    ||||||||| ||||  ||||||||||||||| | ||||||||||| ||||| ||||| || |||||||||||||| || |||||||||||    |||||     
T  5788722 ttaccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaa 5788821  T
Q  591 cacttctcacacttccacttcttctcac 618  Q
    ||||| ||||| ||||||||||||||||    
T  5788822 cacttttcacatttccacttcttctcac 5788849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 507 - 618
Target Start/End: Complemental strand, 33186846 - 33186735
Alignment:
Q  507 gttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagcacttctcacacttcc 606  Q
    |||||||| |||||||| || ||||||| ||||||   ||| ||||||||||||||||| || |||||||||||    || || || |||||||| ||||    
T  33186846 gttccacaatcacatttatactctctagaaccacaaactttagagtgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttcc 33186747  T
Q  607 acttcttctcac 618  Q
    |||| |||||||    
T  33186746 actttttctcac 33186735  T

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Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 491 - 618
Target Start/End: Complemental strand, 4160504 - 4160377
Alignment:
Q  491 ttaccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgag 590  Q
    ||||||||| ||||  |||||||||||||| || || ||| |||| |||||  |||| || |||||||||||||| |||||||| ||||| ||||| ||     
T  4160504 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 4160405  T
Q  591 cacttctcacacttccacttcttctcac 618  Q
    || |||||||||||||||||||||||||    
T  4160404 catttctcacacttccacttcttctcac 4160377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 492 - 618
Target Start/End: Complemental strand, 36989466 - 36989340
Alignment:
Q  492 taccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagc 591  Q
    ||||| |||||||| ||||||||||||||||||||||| || ||||||||| |||| || |||||||||||||| || |||||||||||    || || |    
T  36989466 tacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaac 36989367  T
Q  592 acttctcacacttccacttcttctcac 618  Q
    |||| ||||| |||||||| |||||||    
T  36989366 acttatcacatttccactttttctcac 36989340  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 492 - 618
Target Start/End: Original strand, 28496106 - 28496232
Alignment:
Q  492 taccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagc 591  Q
    |||||||| ||||  || ||||||||||||||||||||||| ||||||||||||||||  |||||||||||||| || || || |||||   ||| || |    
T  28496106 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 28496205  T
Q  592 acttctcacacttccacttcttctcac 618  Q
    | || ||||| ||||||||||||||||    
T  28496206 atttttcacatttccacttcttctcac 28496232  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 510 - 618
Target Start/End: Original strand, 31644076 - 31644184
Alignment:
Q  510 ccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagcacttctcacacttccact 609  Q
    ||||| |||||||| ||||||| ||||||||| ||||| ||||||||||||||||| || |||||||||||    ||||||||||| ||||| ||||| |    
T  31644076 ccacaatcacatttatattctcgagtaccacaggttttagagtgagctttccaatcagaatgaacagcatagatctttgagcacttatcacatttccatt 31644175  T
Q  610 tcttctcac 618  Q
    | |||||||    
T  31644176 ttttctcac 31644184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 492 - 618
Target Start/End: Original strand, 12804511 - 12804637
Alignment:
Q  492 taccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagc 591  Q
    |||||||| |||| ||| |||||||||||| | || || ||||||||||| || || || |||||||||||||| || |||||||||||    || || |    
T  12804511 taccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 12804610  T
Q  592 acttctcacacttccacttcttctcac 618  Q
    |||| ||||| |||||||| |||||||    
T  12804611 acttttcacatttccactttttctcac 12804637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 510 - 618
Target Start/End: Complemental strand, 42287225 - 42287117
Alignment:
Q  510 ccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagcacttctcacacttccact 609  Q
    ||||| |||||| | ||||||||||||||||| || || || || |||||||| || || |||||||||||    |||||||| || ||||| |||||||    
T  42287225 ccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatatttctttgagcatttttcacatttccact 42287126  T
Q  610 tcttctcac 618  Q
    |||||||||    
T  42287125 tcttctcac 42287117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 491 - 618
Target Start/End: Complemental strand, 12775064 - 12774937
Alignment:
Q  491 ttaccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgag 590  Q
    |||||| || |||| ||| |||||||||||| | || ||  |||||||||| ||||| || |||||||||||||| || |||||||||||    || ||     
T  12775064 ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagttttagaatgagctttccaatcagattgaacagcatacttcttagaa 12774965  T
Q  591 cacttctcacacttccacttcttctcac 618  Q
    ||||| ||||||||||| || |||||||    
T  12774964 cacttttcacacttccattttttctcac 12774937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 618
Target Start/End: Original strand, 50788818 - 50788945
Alignment:
Q  491 ttaccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgag 590  Q
    |||||| || |||| ||| |||||||||||  | |||||||| || ||||| || || || || || |||||||| || |||||||||||    || |||    
T  50788818 ttacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagag 50788917  T
Q  591 cacttctcacacttccacttcttctcac 618  Q
    ||||| ||||||||||| ||||||||||    
T  50788918 cacttatcacacttccatttcttctcac 50788945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 548 - 619
Target Start/End: Complemental strand, 1983246 - 1983175
Alignment:
Q  548 tgagtgagctttccaatctgactgaacagcataacgttttgagcacttctcacacttccacttcttctcact 619  Q
    |||||| ||||||||||| || |||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  1983246 tgagtgtgctttccaatccgattgaacaacataaaattttgagcacttctcacacttccacttcttctcact 1983175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 596
Target Start/End: Complemental strand, 12106172 - 12106124
Alignment:
Q  548 tgagtgagctttccaatctgactgaacagcataacgttttgagcacttc 596  Q
    |||||| ||||||||||| || ||||||||||||  |||||||||||||    
T  12106172 tgagtgtgctttccaatccgattgaacagcataaaattttgagcacttc 12106124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 596
Target Start/End: Original strand, 46987775 - 46987823
Alignment:
Q  548 tgagtgagctttccaatctgactgaacagcataacgttttgagcacttc 596  Q
    |||||| ||||||||||| || ||||||||||||  |||||||||||||    
T  46987775 tgagtgtgctttccaatccgattgaacagcataaaattttgagcacttc 46987823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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