View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20514_low_6 (Length: 551)
Name: NF20514_low_6
Description: NF20514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20514_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 6 - 532
Target Start/End: Complemental strand, 14458361 - 14457856
Alignment:
| Q |
6 |
gaagaatattcgaggaaactcgtgaagggtgttgattattttgattctatcaaagaactcctcgatgaagttgctgcataccctctactaatcaaagatc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14458361 |
gaagaatattcgaggaaactcgtgaagggtgttgattattttgattctatcaaagaactcctcgatgaagttgctgcataccctctactaatcaaagatc |
14458262 |
T |
|
| Q |
106 |
ctgcttcgaaaaatgattctgatagaaaagactctaaagggaagcagataaatgaatccgattacgttgctgtaaggtacttggataaggggagcgggag |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14458261 |
ctgcttcgaaaaatgattctgatagaaaagactctaaagggaagcagataaaggaatccgattacgttgctgtaaggtacttggataaggggagc----- |
14458167 |
T |
|
| Q |
206 |
cactagtggagcatctgtcaactttgaaaaaactccttcagtagaagtgtctccaaaagaaactactattgatcttaacttagcagtgacctttgaaaaa |
305 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14458166 |
-actagtggagcatctgccaactttgaaaaaactccttcagtagaa---------------actactattgatcttaacttagcagtgacctttgaaaaa |
14458083 |
T |
|
| Q |
306 |
gttgatggtgatgaaactatggtgaatgaagttcctgatgaggtcaaatttgatgagcctaatgctgttacagttccaacatcagagggtcacatcggga |
405 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14458082 |
gttgatggtgatgaaactatggtgaatgaagttcctgctgaggtcaaatttgatgactctaatgctgttacagttccaacatcagagggtcacatcggga |
14457983 |
T |
|
| Q |
406 |
atcaagctgtagaaactccgaggaagagtagaagacctccaaaaccaacaaagagagcattggaagctgttgtcgataagtatgaagaggagacgagcaa |
505 |
Q |
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| T |
14457982 |
atcaagctgtagaaactccgaggaagagtagaagaccttcaaaaccaacaaagagagcattggaagctgttgtcgataagtatgaagaggatacgagcaa |
14457883 |
T |
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| Q |
506 |
gaagaggaggtgaatgtaagattcacc |
532 |
Q |
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| T |
14457882 |
gaagaggaggcgaatgtaagattcacc |
14457856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 6 - 532
Target Start/End: Complemental strand, 14467246 - 14466730
Alignment:
| Q |
6 |
gaagaatattcgaggaaactcgtgaagggtgttgattattttgattctatcaaagaactcctcgatgaagttgctgcataccctctactaatcaaagatc |
105 |
Q |
| |
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||||| ||||||||||| || |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| || ||||||||||| ||||||| |
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| T |
14467246 |
gaagagtattcgaggaatctagtgaagggtgttgattatttccattctatcaaagatatcctcgatgaagttgctgcttatcctctactaataaaagatc |
14467147 |
T |
|
| Q |
106 |
ctgcttcgaaaaatgattctgatagaaaagactctaaagggaagcagataaatgaatccgattacgttgctgtaaggtacttggataaggggagcgggag |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14467146 |
ctgcttcgaaaaatgattctgatagaaaagactctaaagcgaagcagataaaggaattcgattacgttgctgtaaggtacttggataaggggagc----- |
14467052 |
T |
|
| Q |
206 |
cactagtggagcatctgtcaactttgaaaaaactccttcagtagaagtgtctccaaaagaaactactattgatcttaacttagcagtgacctttgaaaaa |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
14467051 |
-actagtggagcatctgtcaactttgaaaaaactccttcagtagaagtgtctccaaaagaaactactattgatcttaacttagcagtggccttagaaaaa |
14466953 |
T |
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| Q |
306 |
gttgatggtgatgaaactatggtgaatgaagttcctgatgaggtcaaatttgatgagcctaatgctgttacagttccaacatcagagggtcacatcggga |
405 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||| ||||| |||||||||||||| | ||||||||| |
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| T |
14466952 |
gttgatggtgatgaaactatggtgaacgaagttcctgctgaggtcaaatttaatgagcctaatgtagttac---tccaacatcagaggattacatcggga |
14466856 |
T |
|
| Q |
406 |
atcaagctgtagaaactccgaggaagagtagaagacctccaaaaccaacaaagagagcattggaagctgttgtcgataagtatgaagaggagacgagcaa |
505 |
Q |
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|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||| |
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| T |
14466855 |
atcaagctgtagaaactccgaggaagagcggaagaccgccaaaaccaacaaagagagcattggaagctgttgtcgacaagtacgaagaggaaacaagcaa |
14466756 |
T |
|
| Q |
506 |
gaagaggaggtgaatgtaagattcacc |
532 |
Q |
| |
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||||||||| | |||||||||||||| |
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| T |
14466755 |
caagaggaggcg-atgtaagattcacc |
14466730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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