View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20514_low_7 (Length: 530)
Name: NF20514_low_7
Description: NF20514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20514_low_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Original strand, 7296101 - 7296636
Alignment:
| Q |
1 |
acaaacaaacaacggcaaccctataataggccacaaatttaacctctctttctaaaatcatcttcaacaaaatgtcacaaaatagaaaattctacgaagg |
100 |
Q |
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| T |
7296101 |
acaaacaaacaacggcaaccctataataggccacaaatttaacctctctttctaaaatcatcttcaacaaaatgtcaaaaaatagaaaattctacgaagg |
7296200 |
T |
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| Q |
101 |
tggttcatgtttgtattacgagtacttttcgaaccccttcctttatatgttattttaggtgagtgttgttgttgtt---tatatttaggtcgaatttccc |
197 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| |
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| T |
7296201 |
tggttcatgtttgtattacgagtgcttttcgaaccccttcctttatatgttattttaggtgattgttgttgttgttgtttatatttaggtcgaatatcct |
7296300 |
T |
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| Q |
198 |
taatacttctcctcggttaatgagtcaagtattaactatatgtctttnnnnnnnnnnnnnnn---cttctatatatatcattttatcattcaaaataaag |
294 |
Q |
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| T |
7296301 |
tgatacttctcctcagttgatgagtcaagtattaactatatttctttaaaaaaaaaaaaaaaaatcttctatatatatcattttgtcattcaaaataaag |
7296400 |
T |
|
| Q |
295 |
aacaaagtaattagaacataaaatacaaggagaggagtctccgtaatcctccgacggaaccctctccatcaccatggatgatgcattcaaggtgattcaa |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7296401 |
aacaaagtaattagaacataaaatacaaggagaggagtctccgtaatcctccgacggaaccctctccatcaccatggataatgcattcaaggtgattcaa |
7296500 |
T |
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| Q |
395 |
acccttaatttctacctttcagaacacccttctatagttggatttcgatggagtcacactcaatcttggggttcaacatggtcttttatctttatgtcca |
494 |
Q |
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| T |
7296501 |
acccttaatttctacctttcagaacacccttctatagttggatttcgatggagtcacactcaatcttggggttcaacatggtcttttatctttatgtcca |
7296600 |
T |
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| Q |
495 |
tagcaatttacattgtaacctctcttttactccacc |
530 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
7296601 |
tagcaatttacattgtaacctctcttttactccacc |
7296636 |
T |
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