View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20514_low_9 (Length: 500)
Name: NF20514_low_9
Description: NF20514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20514_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 230 - 478
Target Start/End: Complemental strand, 4037428 - 4037179
Alignment:
| Q |
230 |
acgtaaatttggtatcattcgtccgcaatttgcaaagactaatccctcgaatcttgtatgattaaaatgggtgctaaatatttttgatagttttaatttt |
329 |
Q |
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| T |
4037428 |
acgtaaatttggtatcattcgtccgcaatttgcagagactaatccctcgagtcttgtatgactaaaatgggtgctaaatatttttgatagttttaacgtt |
4037329 |
T |
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| Q |
330 |
actgcatatcaaaggtcaaattcgaattcaaaaccttgattaaattaaaaaagatttatgtcatctcctcaaaacgcttttgagtgcgtatgtgagtttt |
429 |
Q |
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| T |
4037328 |
gctgcatcttaaagggcaaattcgaattcaaaaccttgattaaattagaaaagatttgtgtcatctcctcaaaacgcttttgagtgcgtatgtgagtttt |
4037229 |
T |
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| Q |
430 |
gacc-aacatgnnnnnnnnaaattgcatattgagtgaacaatctactcct |
478 |
Q |
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| T |
4037228 |
gaccgaacatgttttttttaaattgcatattgagtgaacaatctactcct |
4037179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 4037649 - 4037491
Alignment:
| Q |
9 |
gattattcttacccttatttctcttcattgtttaaaataaaaaattgcacctatcccacaagtacgtttaaatagtgaaagacaaaatagacatttaata |
108 |
Q |
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| T |
4037649 |
gattattcttacccttatttctcttcattgtttaaaataaaaaattgcacctatcccacaagtacgtttaaatagtgaaagacaaaatagacatttaata |
4037550 |
T |
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| Q |
109 |
tattagaatgcatattctaacatgcaattttaatattttcgatatctaatgtatgtgag |
167 |
Q |
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| T |
4037549 |
tattagaatgcatattctaacatgcaattttaatattttcgatatctaatgtatgtgag |
4037491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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