View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20515_high_14 (Length: 361)
Name: NF20515_high_14
Description: NF20515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20515_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 8879172 - 8879498
Alignment:
| Q |
20 |
gattatttatgaatatataacttatataagaaccattgaacacctgaatattattacatataattaccaagaaagtaaaccaaaccaatgtaatttcttt |
119 |
Q |
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| T |
8879172 |
gattatttatgaatat--aacttatataagaaccattgaacacctgaatattattacatataattaccaagaaagtaaaccaaaccaatgtaatttcttt |
8879269 |
T |
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| Q |
120 |
agtttgtcaaaagagaacttccttccttaataagaacaaacacactgccaccatcaccccttgcgacgcgtagttcttcatcaaggtatgtagtaagcaa |
219 |
Q |
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| T |
8879270 |
agtttgtcaaaagagaacttccttccttaataagaacaaacacactgccaccatcaccccttgcgacgcgtagttcttcatcaaggtatgtagtaagcaa |
8879369 |
T |
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| Q |
220 |
ccatgattgagcatagctgttggagattgggatcttcaacggaggctgatcggaaattgtttgcacaaccgatgaggcagtgttttggatagaagtaaat |
319 |
Q |
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| T |
8879370 |
ccatgattgagcatagctgttggagattgggatcttcaacggaggctgatcggaaattgtttgcacaaccgatgaggcggtgttttggatagaagtaaat |
8879469 |
T |
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| Q |
320 |
atgtctttgaaagatgatagatcaatctc |
348 |
Q |
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| T |
8879470 |
atgtctttgaaagatgatagatcaatctc |
8879498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 110 - 347
Target Start/End: Original strand, 8883059 - 8883296
Alignment:
| Q |
110 |
taatttctttagtttgtcaaaagagaacttccttccttaataagaacaaacacactgccaccatcaccccttgcgacgcgtagttcttcatcaaggtatg |
209 |
Q |
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| T |
8883059 |
taatttctttagtttgtcaaaagagaacttccttccttgataagaacaaacacactgccaccatcgccccttgagatacgtagttcttcatcaaggtatg |
8883158 |
T |
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| Q |
210 |
tagtaagcaaccatgattgagcatagctgttggagattgggatcttcaacggaggctgatcggaaattgtttgcacaaccgatgaggcagtgttttggat |
309 |
Q |
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| T |
8883159 |
tagtaagcaaccatgattgagcgttgtcgttggaaattgggatcttcaacggaggctgattggaaattgtttgcacgacagatgaggcagtgttttggac |
8883258 |
T |
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| Q |
310 |
agaagtaaatatgtctttgaaagatgatagatcaatct |
347 |
Q |
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| T |
8883259 |
agaagtaaatatgcctttgaaaggtgatagatcaatct |
8883296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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