View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20515_high_20 (Length: 308)
Name: NF20515_high_20
Description: NF20515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20515_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 292
Target Start/End: Original strand, 43408634 - 43408917
Alignment:
| Q |
15 |
atgagattgaatatggatccatcttttgctgatgcaggctgttgattttagaagtagtcacaacatgaatatcccacaagcagtaaaggtaa---gcaaa |
111 |
Q |
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| T |
43408634 |
atgagattgaatatggatccatcttttgctgatgcaggctgttgattttagaagtagtcacaacatgaatatcccacaagcagtaaaggtaattagcaaa |
43408733 |
T |
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| Q |
112 |
caatca---tcagatcatagtactggatttgattaaatcaacaaaaactaaataaaattgtttctaaaaatgatatgataatgaataattaggtatttga |
208 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43408734 |
caatcatcatcagatcatagtactggatttgattagatcaacaaaaactatataaaattgtttctaaaaatgatatgataatgaataattaggtatttga |
43408833 |
T |
|
| Q |
209 |
agagctatatgaagcagccgtgaacgagataatggaagtgttggcttcagtgtgcaagacgcacaatttaccattagcactaac |
292 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43408834 |
agagctatatgaagcagcggtgaacgagataatggaagtgttggcgtcagtgtgcaagacgcacaatttaccattagcactaac |
43408917 |
T |
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