View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20515_high_30 (Length: 227)
Name: NF20515_high_30
Description: NF20515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20515_high_30 |
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| [»] scaffold0635 (1 HSPs) |
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Alignment Details
Target: scaffold0635 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0635
Description:
Target: scaffold0635; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 2420 - 2214
Alignment:
| Q |
1 |
tcttaagaaacttaacttgtgttatccaatttatatgtgatcaaacttgggaacaaacgcaacataagtcaagtcttgcatgtaccaaacacgctaagtc |
100 |
Q |
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| T |
2420 |
tcttgagaaacttaacttgtgttatccaatttatatgtgatcaaacttgggaacaaacgcaacataagtcaagtcttgcatgtaacaaacacgctaagtc |
2321 |
T |
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| Q |
101 |
attaatatcaaggtcgtattttaaagaaataaccgataaattaatttctagcataaagttactttctagaaaaccaagttgattgggctccggcggtaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
2320 |
attaatatcaaggtcgtattttaaagaaataaccgata----aatttctagcataaagttactttctagaaaaccaagttaattgggctccggtggtaag |
2225 |
T |
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| Q |
201 |
gagcacctttc |
211 |
Q |
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||||||||||| |
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| T |
2224 |
gagcacctttc |
2214 |
T |
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Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 10106364 - 10106570
Alignment:
| Q |
1 |
tcttaagaaacttaacttgtgttatccaatttatatgtgatcaaacttgggaacaaacgcaacataagtcaagtcttgcatgtaccaaacacgctaagtc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10106364 |
tcttgagaaacttaacttgtgttatccaatttatatgtgatcaaacttgggaacaaacgcaacataagtcaagtcttgcatgtaacaaacacgctaagtc |
10106463 |
T |
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| Q |
101 |
attaatatcaaggtcgtattttaaagaaataaccgataaattaatttctagcataaagttactttctagaaaaccaagttgattgggctccggcggtaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
10106464 |
attaatatcaaggtcgtattttaaagaaataaccgata----aatttctagcataaagttactttctagaaaaccaagttaattgggctccggtggtaag |
10106559 |
T |
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| Q |
201 |
gagcacctttc |
211 |
Q |
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| T |
10106560 |
gagcacctttc |
10106570 |
T |
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