View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20515_high_31 (Length: 226)

Name: NF20515_high_31
Description: NF20515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20515_high_31
NF20515_high_31
[»] chr4 (3 HSPs)
chr4 (1-210)||(36790673-36790882)
chr4 (1-48)||(17889422-17889469)
chr4 (1-31)||(49588211-49588241)
[»] chr2 (3 HSPs)
chr2 (1-33)||(2341346-2341378)
chr2 (1-31)||(5900542-5900572)
chr2 (1-35)||(43633460-43633494)
[»] chr5 (4 HSPs)
chr5 (1-56)||(37278743-37278798)
chr5 (1-47)||(10102805-10102851)
chr5 (1-49)||(10105887-10105935)
chr5 (1-49)||(13856015-13856063)
[»] chr3 (1 HSPs)
chr3 (1-48)||(21884113-21884160)
[»] chr1 (3 HSPs)
chr1 (1-48)||(43014383-43014430)
chr1 (1-49)||(10542391-10542439)
chr1 (1-49)||(42409596-42409644)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 36790882 - 36790673
Alignment:
Q  1 taaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtgccttcttctgtttaccaaaggtttcattctatattgaataacagcgaaaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  36790882 taaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtgccttcctctgtttaccaaaggtttcattatatattgaataacagcgaaaact 36790783  T
Q  101 tttgttggttgtgcgatgtgggacttggcttgctgctgcttcttcactcacctaaacatcacttatgcaaaactatcatagtttcttatgcatttattta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36790782 tttgttggttgtgcgatgtgggacttggcttgctgctgcttcttcactcacctaaacatcacttatgcaaaactatcatagtttcttatgcatttattta 36790683  T
Q  201 ataacatata 210  Q
    ||||||||||    
T  36790682 ataacatata 36790673  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 17889469 - 17889422
Alignment:
Q  1 taaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtg 48  Q
    |||||||||||||||||||||||| |||||||||| | | ||||||||    
T  17889469 taaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtg 17889422  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 49588211 - 49588241
Alignment:
Q  1 taaaaggcgaaagaatagttcgctttgtgct 31  Q
    |||||||||||||||||||||||||||||||    
T  49588211 taaaaggcgaaagaatagttcgctttgtgct 49588241  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2341346 - 2341378
Alignment:
Q  1 taaaaggcgaaagaatagttcgctttgtgctca 33  Q
    |||||||||||||||||||||||||||||||||    
T  2341346 taaaaggcgaaagaatagttcgctttgtgctca 2341378  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 5900572 - 5900542
Alignment:
Q  1 taaaaggcgaaagaatagttcgctttgtgct 31  Q
    |||||||||||||||||||||||||||||||    
T  5900572 taaaaggcgaaagaatagttcgctttgtgct 5900542  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 43633460 - 43633494
Alignment:
Q  1 taaaaggcgaaagaatagttcgctttgtgctcatc 35  Q
    ||||||||||||||||||||| |||||||||||||    
T  43633460 taaaaggcgaaagaatagttcactttgtgctcatc 43633494  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37278743 - 37278798
Alignment:
Q  1 taaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtgccttcttc 56  Q
    |||||||||||||||||||||| | |||||||||| | | ||||||| ||||||||    
T  37278743 taaaaggcgaaagaatagttcgttatgtgctcatcacacggctccgttccttcttc 37278798  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 10102851 - 10102805
Alignment:
Q  1 taaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgt 47  Q
    |||||||||||||||||||||||| |||| ||||| | |||||||||    
T  10102851 taaaaggcgaaagaatagttcgctatgtgatcatcacacagctccgt 10102805  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10105935 - 10105887
Alignment:
Q  1 taaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtgc 49  Q
    |||||||||||||||||||||||| |||| ||||| | | |||||||||    
T  10105935 taaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgc 10105887  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13856063 - 13856015
Alignment:
Q  1 taaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtgc 49  Q
    |||||||||||||||||||||||| |||| ||||| | | |||||||||    
T  13856063 taaaaggcgaaagaatagttcgctatgtgatcatcactcggctccgtgc 13856015  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 21884113 - 21884160
Alignment:
Q  1 taaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtg 48  Q
    |||||||||||||||||||||||| |||||||||| | | ||||||||    
T  21884113 taaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtg 21884160  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 43014383 - 43014430
Alignment:
Q  1 taaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtg 48  Q
    |||||||||||||||||||||||| |||||||||| | | ||||||||    
T  43014383 taaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtg 43014430  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10542439 - 10542391
Alignment:
Q  1 taaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtgc 49  Q
    |||||||||||||||||||||||| |||| ||||| | | |||||||||    
T  10542439 taaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgc 10542391  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42409644 - 42409596
Alignment:
Q  1 taaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccgtgc 49  Q
    |||||||||||||||||||||||| |||  ||||| | |||||||||||    
T  42409644 taaaaggcgaaagaatagttcgctatgtcatcatcacacagctccgtgc 42409596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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