View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20515_high_32 (Length: 223)
Name: NF20515_high_32
Description: NF20515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20515_high_32 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 1684400 - 1684214
Alignment:
| Q |
18 |
actttgctggacaacatatgctctgctccatccctttgacctttatgttctggtaatttatattcctatagtattgttgtgacttgtgagttaataattg |
117 |
Q |
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| T |
1684400 |
actttgctggacaacatatgctctgctccatccctttgacctttatgttctggtaatttatattcctatagtattgttgtgacttgtgagttaataattg |
1684301 |
T |
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| Q |
118 |
gatgaatgatttatacttaacccatattaattaattaatgtacattttcactgactactacagatcagcaatggtattggagtaatctctg |
208 |
Q |
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| T |
1684300 |
gatgaatgatttatacttaacccatattaattaata----tacactttcactgactactgcagatcagcaatggtattggagtaatctctg |
1684214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 1694835 - 1694736
Alignment:
| Q |
18 |
actttgctggacaacatatgctctgctccatccctttgacctttatgttctggtaatttatattcctatagtattgttgtgacttgtgagttaataattg |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1694835 |
actttgctggacaacatatgctctgctccacccctttgacatttatgttctggtaatttatattcctatagtattgttgtgatttgtgagttaataattg |
1694736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 1694713 - 1694635
Alignment:
| Q |
125 |
gatttatacttaacccatattaattaattaatgtacattttcactgactactacagatcagcaatggtattggagtaatctctg |
208 |
Q |
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|||||||||||||||||| || |||||| |||||||| ||||| || | |||||||| |||||||||||||||||||||| |
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| T |
1694713 |
gatttatacttaacccatgtt-----attaatatacatttttactgattattgcagatcagtaatggtattggagtaatctctg |
1694635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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