View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20515_high_6 (Length: 562)
Name: NF20515_high_6
Description: NF20515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20515_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 37 - 550
Target Start/End: Complemental strand, 29165954 - 29165444
Alignment:
| Q |
37 |
tggtaatgagttatatctatcttttagaggaatcaaaaattaatttttagatagaataattttcgatcagactttaattatctttttcaattaaacttca |
136 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| | |
|
|
| T |
29165954 |
tggtaatgagttatatctatcttttagaagaatccaaaattaatttttagatagaataattttctatcagactttaattatctttttcagttaaacttta |
29165855 |
T |
|
| Q |
137 |
gattatcaaagcttctcctttgaaaaccggagtgttaacaccaaaaacacnnnnnnnnggtaagaatgataattaacatttcctaattagttttttgaca |
236 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29165854 |
gattatcaaagcttcttctttgaaaaccggagtgttaacaccaaaaacacaaaaa---ggtaagaatgataattaacatttcctaattagttttttgaca |
29165758 |
T |
|
| Q |
237 |
agaatattttctatttagttataggacttaaacataaatatcgacaataacaagaagtggtgtgattaatcaacgtgcgagcacaagaaagagtgtttgg |
336 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29165757 |
agaatattttctatttagttagaggacttaaacataagtatcgacaataacaaaaagtggcgtgattaatcaacgtgcgagcacaaacaagagtgtttgg |
29165658 |
T |
|
| Q |
337 |
tagttcaactgatttacattaaaggttaaatattatgttctaatcttaatgaaaaataaaatactagtagtatattaatatttgactaaaacaaagacgc |
436 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29165657 |
tagttcagctgatttacattaaaggttaaatatcatgttctaatcttaatgaaaaataaaatactagtagtatattaatatttgactaaaacaaagacgc |
29165558 |
T |
|
| Q |
437 |
tgacactaacagattcactggtcaaaaatttcagttagtgaatcagattgagatcaagtttaaaaggaatatgcttcgtggcatatagcaaccccaaacc |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29165557 |
tgacactaacagattcactggtcaaaaatttcagttagtgaatcagattgagatcaagtttaaaaggaatatgcttcgtggcatatagcaaccccaaacc |
29165458 |
T |
|
| Q |
537 |
agaatattcagaat |
550 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29165457 |
agaatattcagaat |
29165444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University