View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20515_high_7 (Length: 462)
Name: NF20515_high_7
Description: NF20515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20515_high_7 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 2 - 446
Target Start/End: Original strand, 28607797 - 28608241
Alignment:
| Q |
2 |
gatattcttggtacacatgacgttgttggtgcatttgtatacgggttgattttacctcatggtaaatttgctgacatggtcacatcaatgactaatgatt |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28607797 |
gatattcttggtacacatgacgttgttggtgcatttgtatacgggttgattttacctcacggtaaatttgctgacatggtcacatcaatgactaatgatt |
28607896 |
T |
|
| Q |
102 |
ttggtggtgggtttctagcaccaatttactttattggaagtggattgaaactcatgttcgtgcccgttttctatcaaccaagttggccctttacacttat |
201 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28607897 |
ttggtggtgggtttctagcaccaatttactttattggcagtggattgaaactcatgttcgtgcccgttttctatcaaccaagttggccctttacacttat |
28607996 |
T |
|
| Q |
202 |
cattatactcttgatgtgtgttctaaagattctaagcactttgttttccactttcttgtttggcatgcgtactcgagatggttttgctttaggcttgctt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28607997 |
cattatactcttgatgtgtgttctaaagattctaagcactttgttttccactttcttgtttggcatgcgtactcgagatggttttgctttaggcttgctt |
28608096 |
T |
|
| Q |
302 |
ctcaatacaaagggtgtcgttgcattaataatgctcaacatttcatgggatagaatggtattgatctacttgaaaattattatttactaccttttttaat |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28608097 |
ctcaatacaaagggtgtcgttgcattaataatgctcaacatttcatgggatagaatggtattgatctacttgaaaattattatttactcccttttttaat |
28608196 |
T |
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| Q |
402 |
aactcacacttcaaaattataaatgtttaatttttgatttgttat |
446 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608197 |
aactcacacttcaaaattataaatgtttaatttttgatttgttat |
28608241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 220 - 356
Target Start/End: Complemental strand, 7589567 - 7589432
Alignment:
| Q |
220 |
tgttctaaagattctaagcactttgttttccactttcttgtttggcatgcgtactcgagatggttttgctttaggcttgcttctcaatacaaagggtgtc |
319 |
Q |
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||||| ||||||||||| |||||||||| ||| |||||| |||||| | ||| || ||||||||||||||||| ||||||||| ||||| || |||||| |
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| T |
7589567 |
tgttcaaaagattctaaacactttgtttgccagtttcttttttggcgtacgtgttc-agatggttttgctttagacttgcttcttaatactaaaggtgtc |
7589469 |
T |
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| Q |
320 |
gttgcattaataatgctcaacatttcatgggatagaa |
356 |
Q |
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| ||| || ||||||||||||||| |||||||||| |
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| T |
7589468 |
gctgcgttgataatgctcaacattgattgggatagaa |
7589432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 7589741 - 7589668
Alignment:
| Q |
45 |
ggttgattttacctcatggtaaatttgctgacatggtcacatcaatgactaatgattttggtggtgggtttctag |
119 |
Q |
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||||||||||||| || |||| ||||||||||||||||| |||| ||| |||||||||||||||| |||||||| |
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| T |
7589741 |
ggttgattttaccacacagtaa-tttgctgacatggtcacgtcaacgaccaatgattttggtggtgtgtttctag |
7589668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 2 - 424
Target Start/End: Complemental strand, 439106 - 438684
Alignment:
| Q |
2 |
gatattcttggtacacatgacgttgttggtgcatttgtatacgggttgattttacctcatggtaaatttgctgacatggtcacatcaatgactaatgatt |
101 |
Q |
| |
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|||| |||||| |||||||| |||||||| || ||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
439106 |
gatactcttggcacacatgatgttgttggggcttttttatacgggttgattttacctcacggtaaatttgctgacatggtcgtgtcaatgactaatgatt |
439007 |
T |
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| Q |
102 |
ttggtggtgggtttctagcaccaatttactttattggaagtggattgaaactcatgttcgtgcccgttttctatcaaccaagttggccctttacacttat |
201 |
Q |
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||||| ||| ||||| ||||| || |||||| ||| | ||||| ||||||||| | || |||||| ||| |||| ||| ||| ||||||||| |
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| T |
439006 |
ttggtattggctttcttgcaccgatctacttttgtggcaatggatcaaaactcatggtgaaaaccattttctttcagccaaattgtgcctatacacttat |
438907 |
T |
|
| Q |
202 |
cattatactcttgatgtgtgttctaaagattctaagcactttgttttccactttcttgtttggcatgcgtactcgagatggttttgctttaggcttgctt |
301 |
Q |
| |
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||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||||| |||||||||||| ||| ||||||||||||| ||||||||||| |
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| T |
438906 |
cattatactcttgttgtgtgttccaaagattttaagcactttgtttgccactttcttctttggcatgcgtgctcaagatggttttgctctaggcttgctt |
438807 |
T |
|
| Q |
302 |
ctcaatacaaagggtgtcgttgcattaataatgctcaacatttcatgggatagaatggtattgatctacttgaaaattattatttactaccttttttaat |
401 |
Q |
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|||||||| ||||||||||||||| | ||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
438806 |
ctcaataccaagggtgtcgttgcactgataatgctcaatatttcctgggatagatcggtattgatctacttgaaaattattatttactcccttttttaat |
438707 |
T |
|
| Q |
402 |
aactcacacttcaaaattataaa |
424 |
Q |
| |
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||| | || ||||||||||||| |
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| T |
438706 |
aacgctaacgtcaaaattataaa |
438684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 9e-31; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 185 - 341
Target Start/End: Original strand, 13651869 - 13652025
Alignment:
| Q |
185 |
tggccctttacacttatcattatactcttgatgtgtgttctaaagattctaagcactttgttttccactttcttgtttggcatgcgtactcgagatggtt |
284 |
Q |
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|||||||| |||||| | ||||| ||||| | ||||||| ||||||| |||||||||||||| ||||||| || |||||||||||||||| ||| ||| |
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| T |
13651869 |
tggcccttaacacttgtgcttataatcttgttatgtgttccaaagattttaagcactttgtttaccactttattttttggcatgcgtactcaagacagtt |
13651968 |
T |
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| Q |
285 |
ttgctttaggcttgcttctcaatacaaagggtgtcgttgcattaataatgctcaaca |
341 |
Q |
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||||| ||||| || |||||||||| ||||||| | ||||||| ||||||||||||| |
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| T |
13651969 |
ttgctctaggcatgattctcaatactaagggtgcccttgcattgataatgctcaaca |
13652025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 179 - 366
Target Start/End: Original strand, 13659349 - 13659536
Alignment:
| Q |
179 |
ccaagttggccctttacacttatcattatactcttgatgtgtgttctaaagattctaagcactttgttttccactttcttgtttggcatgcgtactcgag |
278 |
Q |
| |
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|||| ||||||||| |||||| | |||||| ||||| | ||||||| |||||| |||||||||||||| | |||||||| ||||| |||||||||| || |
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| T |
13659349 |
ccaacttggcccttaacacttgttattataatcttgttatgtgttccgaagattttaagcactttgtttgctactttcttttttggtatgcgtactcaag |
13659448 |
T |
|
| Q |
279 |
atggttttgctttaggcttgcttctcaatacaaagggtgtcgttgcattaataatgctcaacatttcatgggatagaatggtattgat |
366 |
Q |
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| |||| ||| | ||| || |||||||||||||||||| | ||||| | ||||||||||||| || |||||||||| |||||||| |
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| T |
13659449 |
acagtttagctctcggcatgattctcaatacaaagggtgcccttgcactgataatgctcaacacatcttgggatagaaaagtattgat |
13659536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 13659171 - 13659293
Alignment:
| Q |
1 |
agatattcttggtacacatgacgttgttggtgcatttgtatacgggttgattttacctcatggtaaatttgctgacatggtcacatcaatgactaatgat |
100 |
Q |
| |
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|||||||||||| ||||| ||| ||||||| || ||||| |||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| |
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| T |
13659171 |
agatattcttggaacacaagacattgttggggcttttgtgtacgggttgattttacctcacggtaaatttgctgatatcgtcactacactgactgatgat |
13659270 |
T |
|
| Q |
101 |
tttggtggtgggtttctagcacc |
123 |
Q |
| |
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||| | || |||||||||||||| |
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| T |
13659271 |
ttttgcggcgggtttctagcacc |
13659293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 13651688 - 13651801
Alignment:
| Q |
4 |
tattcttggtacacatgacgttgttggtgcatttgtatacgggttgattttacctcatggtaaatttgctgacatggtcacatcaatgactaatgatttt |
103 |
Q |
| |
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||||||||| ||||| || |||| || || ||||| |||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |||| ||| |
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| T |
13651688 |
tattcttggcacacaagatattgtcggagcttttgtgtacgggttgattttgcctcatggtaaatttgctgatatggtcacgtcaatgactgatgacttt |
13651787 |
T |
|
| Q |
104 |
ggtggtgggtttct |
117 |
Q |
| |
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||||| | |||||| |
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| T |
13651788 |
ggtggcgagtttct |
13651801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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