View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20515_low_1 (Length: 998)
Name: NF20515_low_1
Description: NF20515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20515_low_1 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 590 - 998
Target Start/End: Original strand, 5901119 - 5901529
Alignment:
| Q |
590 |
ccttgactgaatatacatccttttctattactcacaagtttcaaccatagccattagccagcacaacatttttctattctctatataaatagataacata |
689 |
Q |
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| T |
5901119 |
ccttgactgaatatacatccttttctattactcacaagtttcaaccataggcattagccagcacaacatttttctattctctatataagtagataacata |
5901218 |
T |
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| Q |
690 |
tcaattgtaaattccttcacatt--tcaacataactagcaacaatgactatactctctactatgtggctactgcctctctttactttcatttatgtcaat |
787 |
Q |
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| T |
5901219 |
tcacttgtaaattccttcacattattcaacataactagcaacaatgactatactctctactatgtggctaatgcctctctttactttcatttatgtcaat |
5901318 |
T |
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| Q |
788 |
ggtattcttcctattgaagctactcatcatgtttatagaaaccttcagagtttatcttctgatgattccttcaaacaaccttacagaactgcttatcatt |
887 |
Q |
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| T |
5901319 |
ggtattcttcctattgaagctactcaccatgtttatagaaaccttcagagtttatcttctgatgattccttcaaacaaccttacagaactgcttatcatt |
5901418 |
T |
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| Q |
888 |
tccaacctccaaagaattggataaatggtaatttacttgatcttaattaatgttttatactctctatttattttttaaaaatattttacatctctgacag |
987 |
Q |
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| T |
5901419 |
tccaacctccaaagaattggataaatggtaatttacttgatcttaattaatgttttatactctctatttattttttaaaaatattttacatctctgacag |
5901518 |
T |
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| Q |
988 |
atttttccttt |
998 |
Q |
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| T |
5901519 |
atttttccttt |
5901529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 530
Target Start/End: Original strand, 5900553 - 5901059
Alignment:
| Q |
18 |
gagtagacccttagtcaccgtaaaaaacaagttatttgaagtttgatcaaagaatttaaatttttagggagaccaaagaatcttacaagtacaatgttta |
117 |
Q |
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| T |
5900553 |
gagtagacccttagtcaccgtaaaaaacaagttatttgaagtttgatcaaagaatttaaatttttagggagaccaaagaatcttacaagtacaatgttta |
5900652 |
T |
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| Q |
118 |
gcatctttnnnnnnnnngtataaagtttaaccaatgaacgacttcattaatctaaattttctttcctttnnnnnnntgatttaaagactctttcgaagac |
217 |
Q |
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| T |
5900653 |
gcatctttaaaaaaaaagtataaagtttaaccaatgaacgacttcaataatctaaattttctttcctttaaaaaaatgatttaaagactctttcgaggac |
5900752 |
T |
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| Q |
218 |
atgttgataaaataaaattgtgcttctaatatgtactaatggacctcnnnnnnngagttcaattgtggactctcacagtttttagtaaaacaccccannn |
317 |
Q |
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| T |
5900753 |
atgttgatcaaataaaattgtgcttctaatatgaactaatggacctcaaaaaaagagttcaattgtggactctcacagtttttagtaaaacacccca--- |
5900849 |
T |
|
| Q |
318 |
nnnnnnnnnnnnncttcataaaatccattattttagtaaatattgcgagggtccaa----nnnnnnnnnnnnnnnaaattacatattagaacaacccatc |
413 |
Q |
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| T |
5900850 |
-------ttttttcttcataaaatccattattttagtaaatattgcgagggtccaatttttttttatttttttttaaattacatattagaaccacccatc |
5900942 |
T |
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| Q |
414 |
ataaaaataatagcaaatccacaaaannnnnnnnngctttcctttgacatttaagaccacataccttcgtggttgcttcctcacatgagcaatgaatttt |
513 |
Q |
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| T |
5900943 |
ataaaaataatagcaaatccacaaaaaaattttttgctttcctttgacatttaagaccacataccttcgtggttgcttcctcacatgagcaatgaatttt |
5901042 |
T |
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| Q |
514 |
tactcaatagttcttct |
530 |
Q |
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||||||||||||||||| |
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| T |
5901043 |
tactcaatagttcttct |
5901059 |
T |
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