View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20515_low_10 (Length: 438)
Name: NF20515_low_10
Description: NF20515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20515_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 8751448 - 8751743
Alignment:
| Q |
19 |
gagaaaacattttgtcttgaaccaaaatttccaggggggcgacccttatgtgatagttacagcttcctcgttgtttggtttgtaagaaacaaacaaaaac |
118 |
Q |
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| T |
8751448 |
gagaaaacattttgtcttgaaccaaaatttccaggggggcgacacttatgtgatagttacagcttcctccttgtttggtttgtaagaaacaaacaaaaac |
8751547 |
T |
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| Q |
119 |
taaccttacacattatcgtttctaacttaccatattacatacttttttaactacaatataagggagaattaaaggtnnnnnnntggataagggaaaaaga |
218 |
Q |
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| T |
8751548 |
taaccttacatattatcgtttctaacttgtcatattacatacttttttaactacaatataagggagaattaaaggtaaaaaaatggataagggaaaaaga |
8751647 |
T |
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| Q |
219 |
atttgccccactgctctagtttatactattttctctctcagtccttaaactacgaaacaaaagattttgataaataaagtaacgtatatgccatgc |
314 |
Q |
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| T |
8751648 |
atttgccccactactctagtttatactattttctctctcagtccttaagctacgaaacaaaagattttgataaataaagtaacgtatatgtcatgc |
8751743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 337 - 431
Target Start/End: Original strand, 8751779 - 8751873
Alignment:
| Q |
337 |
gcttgcacatggtttatacgctggtgtagtagttaaagggcttatatacatactgtatgatgtagttgtgacgatttgatagatcacctttgctt |
431 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8751779 |
gcttgcacatggtttatacgctggtgtagtagttaaagggcttatatacatactgtatgatgtagttgtgacgatttgatagatcacctttgctt |
8751873 |
T |
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