View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20515_low_13 (Length: 373)

Name: NF20515_low_13
Description: NF20515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20515_low_13
NF20515_low_13
[»] chr4 (2 HSPs)
chr4 (1-300)||(26901742-26902040)
chr4 (1-299)||(26897281-26897578)
[»] chr3 (18 HSPs)
chr3 (1-300)||(24046972-24047271)
chr3 (1-300)||(23674696-23674995)
chr3 (1-299)||(23679201-23679499)
chr3 (1-299)||(24051438-24051736)
chr3 (300-363)||(26235923-26235986)
chr3 (300-369)||(26202022-26202088)
chr3 (300-369)||(26128135-26128201)
chr3 (300-369)||(26178185-26178251)
chr3 (300-363)||(26113639-26113699)
chr3 (300-355)||(26179503-26179555)
chr3 (301-363)||(26129439-26129498)
chr3 (300-369)||(26140081-26140147)
chr3 (1-39)||(23674657-23674695)
chr3 (1-39)||(23679162-23679200)
chr3 (1-39)||(24046933-24046971)
chr3 (303-352)||(26205417-26205463)
chr3 (303-349)||(26233483-26233526)
chr3 (303-349)||(26111137-26111180)
[»] chr1 (2 HSPs)
chr1 (1-300)||(26406582-26406881)
chr1 (1-300)||(26411048-26411347)
[»] chr5 (2 HSPs)
chr5 (1-299)||(27205694-27205991)
chr5 (1-300)||(27210158-27210457)
[»] chr8 (1 HSPs)
chr8 (156-300)||(24859182-24859326)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 26902040 - 26901742
Alignment:
Q  1 ccactatctttaggaagcattatgatagaattgtaaccatcatcataatgattgtctttatttaggtttatggtaggtttgttatcaacctatttgtatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26902040 ccactatctttaggaagcattatgatagaattgtaaccatcatcataatgattgtctttatttaggtttatggtaggtttgttatcaacctatttgtatt 26901941  T
Q  101 ctctatcagtttccttctagcctatataaaggctttgtaatgctaagttgaatgtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26901940 ctctatcagtttccttctagcctatataaaggctttgtaatgctaagttgaa-gtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgt 26901842  T
Q  201 tcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgcaacagtataatttataacataccacttctagaataccaccaacag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26901841 tcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaacag 26901742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 26897578 - 26897281
Alignment:
Q  1 ccactatctttaggaagcattatgatagaattgtaaccatcatcataatgattgtctttatttaggtttatggtaggtttgttatcaacctatttgtatt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26897578 ccactatctttaggaaacattatgatagaattgtaaccatcatcataatgattgtctttatttaggtttatggtaggtttgttatcaacctatttgtatt 26897479  T
Q  101 ctctatcagtttccttctagcctatataaaggctttgtaatgctaagttgaatgtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26897478 ctctatcagtttccttctagcctatataaaggctttgtaatgctaagttgaa-gtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgt 26897380  T
Q  201 tcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgcaacagtataatttataacataccacttctagaataccaccaaca 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26897379 tcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccaccaaca 26897281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 24046972 - 24047271
Alignment:
Q  1 ccactatctttaggaagcattatgatagaattgtaaccatcatcataatgattgtctttatttaggtttatggtaggtttgttatcaacctatttgtatt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24046972 ccactatctttaggaaacattatgatagaattgtaaccatcatcataatgattgtctttatttaggtttatggtaggtttgttatcaacctatttgtatt 24047071  T
Q  101 ctctatcagtttccttctagcctatataaaggctttgtaatgctaagttgaatgtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  24047072 ctctatcagtttccttctagcctatataaaggctttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgt 24047171  T
Q  201 tcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgcaacagtataatttataacataccacttctagaataccaccaacag 300  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24047172 tcatccaccagtggaagtatagtataaaaagtcacgtttccgctcaagatcctgcaacagtataatttataacataccacctctagaataccaccaacag 24047271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 23674696 - 23674995
Alignment:
Q  1 ccactatctttaggaagcattatgatagaattgtaaccatcatcataatgattgtctttatttaggtttatggtaggtttgttatcaacctatttgtatt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23674696 ccactatctttaggaaacattatgatagaattgtaaccatcatcataatgattgtctttatttaggtttatggtaggtttgttatcaacctatttgtatt 23674795  T
Q  101 ctctatcagtttccttctagcctatataaaggctttgtaatgctaagttgaatgtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  23674796 ctctatcagtttccttctagcctatataaaggctttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgt 23674895  T
Q  201 tcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgcaacagtataatttataacataccacttctagaataccaccaacag 300  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23674896 tcatccaccagtggaagtatagtataaaaagtcacgttttcgctcaagatcctgcaacagtataatttataacataccacctctagaataccaccaacag 23674995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 23679201 - 23679499
Alignment:
Q  1 ccactatctttaggaagcattatgatagaattgtaaccatcatcataatgattgtctttatttaggtttatggtaggtttgttatcaacctatttgtatt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23679201 ccactatctttaggaaacattatgatagaattgtaaccatcatcataatgattgtctttatttaggtttatggtaggtttgttatcaacctatttgtatt 23679300  T
Q  101 ctctatcagtttccttctagcctatataaaggctttgtaatgctaagttgaatgtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  23679301 ctctatcagtttccttctagcctatataaaggctttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgt 23679400  T
Q  201 tcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgcaacagtataatttataacataccacttctagaataccaccaaca 299  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23679401 tcatccaccagtggaagtatagtataaaaagtcacgttttcgctcaagatcctgcaacagtataatttataacataccacctctagaataccaccaaca 23679499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 24051438 - 24051736
Alignment:
Q  1 ccactatctttaggaagcattatgatagaattgtaaccatcatcataatgattgtctttatttaggtttatggtaggtttgttatcaacctatttgtatt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24051438 ccactatctttaggaaacattatgatagaattgtaaccatcatcataatgattgtctttatttaggtttatggtaggtttgttatcaacctatttgtatt 24051537  T
Q  101 ctctatcagtttccttctagcctatataaaggctttgtaatgctaagttgaatgtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  24051538 ctctatcagtttccttctagcctatataaaggctttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgt 24051637  T
Q  201 tcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgcaacagtataatttataacataccacttctagaataccaccaaca 299  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24051638 tcatccaccagtggaagtatagtataaaaagtcacgttttcgctcaagatcctgcaacagtataatttataacataccacctctagaataccaccaaca 24051736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 300 - 363
Target Start/End: Complemental strand, 26235986 - 26235923
Alignment:
Q  300 gttctacatcagaaataacagcagcagcagcaactgtgtccaccattacagaaacaaagaataa 363  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  26235986 gttctacatcagaaataacagcagaagcagcaactgtgtccaccattacagacacaaagaataa 26235923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 300 - 369
Target Start/End: Complemental strand, 26202088 - 26202022
Alignment:
Q  300 gttctacatcagaaataacagcagcagcagcaactgtgtccaccattacagaaacaaagaataatctacc 369  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| |||||    
T  26202088 gttctacatcagaaataacagcagcagca---actgtgtccaccattacagaaacaaagaataagctacc 26202022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 300 - 369
Target Start/End: Complemental strand, 26128201 - 26128135
Alignment:
Q  300 gttctacatcagaaataacagcagcagcagcaactgtgtccaccattacagaaacaaagaataatctacc 369  Q
    ||||||||||||||||||||| |||||||   |||||||||||||||||||||||||||||||| |||||    
T  26128201 gttctacatcagaaataacaggagcagca---actgtgtccaccattacagaaacaaagaataagctacc 26128135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 300 - 369
Target Start/End: Complemental strand, 26178251 - 26178185
Alignment:
Q  300 gttctacatcagaaataacagcagcagcagcaactgtgtccaccattacagaaacaaagaataatctacc 369  Q
    ||||||||||||||||||||| |||||||   |||||||||||||||||||||||||||||||| |||||    
T  26178251 gttctacatcagaaataacaggagcagca---actgtgtccaccattacagaaacaaagaataagctacc 26178185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 300 - 363
Target Start/End: Complemental strand, 26113699 - 26113639
Alignment:
Q  300 gttctacatcagaaataacagcagcagcagcaactgtgtccaccattacagaaacaaagaataa 363  Q
    ||||||||||||||||||||| |||||||   |||||| |||||||||||||||||||||||||    
T  26113699 gttctacatcagaaataacagaagcagca---actgtgcccaccattacagaaacaaagaataa 26113639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 300 - 355
Target Start/End: Complemental strand, 26179555 - 26179503
Alignment:
Q  300 gttctacatcagaaataacagcagcagcagcaactgtgtccaccattacagaaaca 355  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  26179555 gttctacatcagaaataacagcagcagca---actgtgtccaccattacagaaaca 26179503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 363
Target Start/End: Complemental strand, 26129498 - 26129439
Alignment:
Q  301 ttctacatcagaaataacagcagcagcagcaactgtgtccaccattacagaaacaaagaataa 363  Q
    ||||||||||||||||||||||| ||||   | ||||||||||||||||||||||||||||||    
T  26129498 ttctacatcagaaataacagcagaagca---attgtgtccaccattacagaaacaaagaataa 26129439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 300 - 369
Target Start/End: Complemental strand, 26140147 - 26140081
Alignment:
Q  300 gttctacatcagaaataacagcagcagcagcaactgtgtccaccattacagaaacaaagaataatctacc 369  Q
    ||||||||||||||||| ||| |||||||   |||||||||| ||||||||||||||||||||| |||||    
T  26140147 gttctacatcagaaatatcagaagcagca---actgtgtccatcattacagaaacaaagaataagctacc 26140081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 23674657 - 23674695
Alignment:
Q  1 ccactatctttaggaagcattatgatagaattgtaacca 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23674657 ccactatctttaggaagcattatgatagaattgtaacca 23674695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 23679162 - 23679200
Alignment:
Q  1 ccactatctttaggaagcattatgatagaattgtaacca 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23679162 ccactatctttaggaagcattatgatagaattgtaacca 23679200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 24046933 - 24046971
Alignment:
Q  1 ccactatctttaggaagcattatgatagaattgtaacca 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24046933 ccactatctttaggaagcattatgatagaattgtaacca 24046971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 26205463 - 26205417
Alignment:
Q  303 ctacatcagaaataacagcagcagcagcaactgtgtccaccattacagaa 352  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||    
T  26205463 ctacatcagaaataacagcagcagca---actgtgtccaccattacagaa 26205417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 26233526 - 26233483
Alignment:
Q  303 ctacatcagaaataacagcagcagcagcaactgtgtccaccattaca 349  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||    
T  26233526 ctacatcagaaataacagcagcagca---actgtgtccaccattaca 26233483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 26111180 - 26111137
Alignment:
Q  303 ctacatcagaaataacagcagcagcagcaactgtgtccaccattaca 349  Q
    ||||||||||||||||||||||   |||||||||| |||||||||||    
T  26111180 ctacatcagaaataacagcagc---agcaactgtggccaccattaca 26111137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 26406582 - 26406881
Alignment:
Q  1 ccactatctttaggaagcattatgatagaattgtaaccatcatcataatgattgtctttatttaggtttatggtaggtttgttatcaacctatttgtatt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26406582 ccactatctttaggaaacattatgatagaattgtaaccatcatcataatgattgtctttatttaggtttatggtaggtttgttatcaacctatttgtatt 26406681  T
Q  101 ctctatcagtttccttctagcctatataaaggctttgtaatgctaagttgaatgtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  26406682 ctctatcagtttccttctagcctatataaaggctttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgt 26406781  T
Q  201 tcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgcaacagtataatttataacataccacttctagaataccaccaacag 300  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26406782 tcatccaccagtggaagtatagtataaaaagtcacgtttccgctcaagatcctgcaacagtataatttataacataccacctctagaataccaccaacag 26406881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 26411048 - 26411347
Alignment:
Q  1 ccactatctttaggaagcattatgatagaattgtaaccatcatcataatgattgtctttatttaggtttatggtaggtttgttatcaacctatttgtatt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26411048 ccactatctttaggaaacattatgatagaattgtaaccatcatcataatgattgtctttatttaggtttatggtaggtttgttatcaacctatttgtatt 26411147  T
Q  101 ctctatcagtttccttctagcctatataaaggctttgtaatgctaagttgaatgtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  26411148 ctctatcagtttccttctagcctatataaaggctttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgt 26411247  T
Q  201 tcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgcaacagtataatttataacataccacttctagaataccaccaacag 300  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26411248 tcatccaccagtggaagtatagtataaaaagtcacgtttccgctcaagatcctgcaacagtataatttataacataccacctctagaataccaccaacag 26411347  T

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Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 27205991 - 27205694
Alignment:
Q  1 ccactatctttaggaagcattatgatagaattgtaaccatcatcataatgattgtctttatttaggtttatggtaggtttgttatcaacctatttgtatt 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27205991 ccactatcgttaggaagcattatgatagaattgtaaccatcatca-aatgattgtctttatttaggtttatggtaggtttgttatcaacctatttgtatt 27205893  T
Q  101 ctctatcagtttccttctagcctatataaaggctttgtaatgctaagttgaatgtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27205892 ctctatcagtttccttctagcctatataaaggctttgtaatgctaagttgaacgtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgt 27205793  T
Q  201 tcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgcaacagtataatttataacataccacttctagaataccaccaaca 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  27205792 tcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgcaacagtataatttataacataccacctctagaataccatcaaca 27205694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 27210457 - 27210158
Alignment:
Q  1 ccactatctttaggaagcattatgatagaattgtaaccatcatcataatgattgtctttatttaggtttatggtaggtttgttatcaacctatttgtatt 100  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27210457 ccactatcgttaggaaacattatgatagaattgtaaccatcatcataatgattgtctttatttaggtttatggtaggtttgttatcaacctatttgtatt 27210358  T
Q  101 ctctatcagtttccttctagcctatataaaggctttgtaatgctaagttgaatgtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgt 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  27210357 ctctatcagtttccttctagtctatataaaggctttgtaatgctaagttgaacgtaagtagtatgtggtgaattcaacaaaatcagtttttcttcaatgt 27210258  T
Q  201 tcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgcaacagtataatttataacataccacttctagaataccaccaacag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  27210257 tcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgcaatagtataatttataacataccacctctagaataccaccaacag 27210158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 156 - 300
Target Start/End: Original strand, 24859182 - 24859326
Alignment:
Q  156 aagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 255  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24859182 aagcagtatgcggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 24859281  T
Q  256 aacagtataatttataacataccacttctagaataccaccaacag 300  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  24859282 aacagtataatttataacataccacctctagaataccaccaacag 24859326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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