View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20515_low_15 (Length: 360)

Name: NF20515_low_15
Description: NF20515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20515_low_15
NF20515_low_15
[»] chr7 (14 HSPs)
chr7 (20-360)||(29445791-29446131)
chr7 (20-357)||(29476478-29476821)
chr7 (198-360)||(29454238-29454400)
chr7 (217-350)||(29431143-29431276)
chr7 (271-360)||(29874356-29874445)
chr7 (198-240)||(29106581-29106623)
chr7 (198-293)||(29895233-29895334)
chr7 (102-166)||(29899039-29899103)
chr7 (198-233)||(29881020-29881055)
chr7 (271-313)||(29867085-29867127)
chr7 (202-240)||(29899145-29899183)
chr7 (271-316)||(29881102-29881147)
chr7 (198-230)||(20058307-20058339)
chr7 (119-167)||(29454440-29454488)
[»] scaffold0242 (2 HSPs)
scaffold0242 (136-357)||(13868-14089)
scaffold0242 (136-357)||(22703-22924)
[»] chr3 (3 HSPs)
chr3 (124-183)||(22128190-22128249)
chr3 (271-316)||(3625580-3625625)
chr3 (198-236)||(32579124-32579162)
[»] chr5 (1 HSPs)
chr5 (198-235)||(24331159-24331196)
[»] chr1 (3 HSPs)
chr1 (198-235)||(21855643-21855680)
chr1 (198-242)||(4366754-4366798)
chr1 (119-167)||(17561089-17561137)


Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 20 - 360
Target Start/End: Complemental strand, 29446131 - 29445791
Alignment:
Q  20 tcaccttcggttgtgatatttctaccggcacttataagattgtggcgtcctattacaatctagatggacaacatacaagccgaattctaagtataggtca 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29446131 tcaccttcggttgtgatatttctaccggcacttataagattgtggcgtcctattacaatctagatggacaacatacaagccgaattctaagtataggtga 29446032  T
Q  120 taatgtttggagacagattcaaagtttccccgttgttcctcttcatttctacttaggtggaaaagctgtgcatgattctgtgtatttgagtggcactctt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29446031 taatgtttggagacagattcaaagtttccccgttgttcctcttcatttctacttaggtggaaaagctgtgcatgattctgtgtatttgagtggaactctt 29445932  T
Q  220 aattggttggctattcgcaatgaatttgactatgatattaaaaatcttagagttgagcagtttgttattgtttcattcgatttggggactgagacattta 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29445931 aattggttggctattcgcaatgaatttgactatgatattaaaaatcttagagttgagcagtttgttattgtttcattcgatttggggactgagacattta 29445832  T
Q  320 gtcggtactgactgcctcgtgattttgatgaaatgccacct 360  Q
    ||| |||| |||||||| |||||||||||||||||||||||    
T  29445831 gtcagtaccgactgcctagtgattttgatgaaatgccacct 29445791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 20 - 357
Target Start/End: Complemental strand, 29476821 - 29476478
Alignment:
Q  20 tcaccttcggttgtgatatttctaccggcacttataagattgtggcgtcctattacaatctagatggacaacatacaagcc------gaattctaagtat 113  Q
    ||||||| || ||||||| |||||| |||||||||||||| ||||| ||| ||||||||| |||| ||||||| | ||         ||||||| ||| |    
T  29476821 tcacctttggatgtgataattctactggcacttataagatagtggcatccaattacaatccagatcgacaacacagaatgaatgtgagaattctcagttt 29476722  T
Q  114 aggtcataatgtttggagacagattcaaagtttccccgttgttcctcttcatttctacttaggtggaaaagctgtgcatgattctgtgtatttgagtggc 213  Q
     ||  |||||||||||||| |||||||||||||||||||||||||| ||||||  ||||| |||| ||| | ||||||| || |||||||||||||| ||    
T  29476721 tggagataatgtttggagagagattcaaagtttccccgttgttcctattcattcgtactttggtgaaaatgatgtgcataatgctgtgtatttgagtagc 29476622  T
Q  214 actcttaattggttggctattcgcaatgaatttgactatgatattaaaaatcttagagttgagcagtttgttattgtttcattcgatttggggactgaga 313  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| || |||||||    
T  29476621 actcttaattggttggctattcacaatgactttgactatgatattaagaatcttagagttgagcagtttgttattgtttcactcgatttaggaactgaga 29476522  T
Q  314 catttagtcggtactgactgcctcgtgattttgatgaaatgcca 357  Q
    |||  | ||  ||| | |||||||||||||||||||||||||||    
T  29476521 catacaatcaataccgtctgcctcgtgattttgatgaaatgcca 29476478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 198 - 360
Target Start/End: Complemental strand, 29454400 - 29454238
Alignment:
Q  198 tgtgtatttgagtggcactcttaattggttggctattcgcaatgaatttgactatgatattaaaaatcttagagttgagcagtttgttattgtttcattc 297  Q
    ||||||||||||  |||||||||||||||||||||||| |||| | ||  ||||| ||| ||| ||| | | ||||||||||||||||||| ||||| |     
T  29454400 tgtgtatttgagcagcactcttaattggttggctattcacaatcacttgcactataatagtaagaatatcacagttgagcagtttgttattatttcactt 29454301  T
Q  298 gatttggggactgagacatttagtcggtactgactgcctcgtgattttgatgaaatgccacct 360  Q
    ||||||||||||||||| |  | |  ||||  | |||||||||||||||||||  ||||||||    
T  29454300 gatttggggactgagacgtacaataagtaccaattgcctcgtgattttgatgaggtgccacct 29454238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 350
Target Start/End: Complemental strand, 29431276 - 29431143
Alignment:
Q  217 cttaattggttggctattcgcaatgaatttgactatgatattaaaaatcttagagttgagcagtttgttattgtttcattcgatttggggactgagacat 316  Q
    ||||||||||||||||||| |||| | ||  ||||| ||  |||  || ||| | ||||||||||||||||| ||||  | |||||||||||||||||||    
T  29431276 cttaattggttggctattcacaatcacttgaactattattctaaggatattacaattgagcagtttgttattctttcgcttgatttggggactgagacat 29431177  T
Q  317 ttagtcggtactgactgcctcgtgattttgatga 350  Q
     || |  |||||   |||||||||||||||||||    
T  29431176 ataataagtacttgttgcctcgtgattttgatga 29431143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 360
Target Start/End: Original strand, 29874356 - 29874445
Alignment:
Q  271 gttgagcagtttgttattgtttcattcgatttggggactgagacatttagtcggtactgactgcctcgtgattttgatgaaatgccacct 360  Q
    |||||| | ||||||||||||||||| |||||| | ||||||||||  | ||||||||   |||||||||||||||||||  ||||||||    
T  29874356 gttgagaattttgttattgtttcatttgatttgagaactgagacatacaatcggtacttcttgcctcgtgattttgatgaggtgccacct 29874445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 29106581 - 29106623
Alignment:
Q  198 tgtgtatttgagtggcactcttaattggttggctattcgcaat 240  Q
    |||||||||||||||||||||||| ||||||||||||| ||||    
T  29106581 tgtgtatttgagtggcactcttaactggttggctattcacaat 29106623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 293
Target Start/End: Original strand, 29895233 - 29895334
Alignment:
Q  198 tgtgtatttgagtggcactcttaattggttggctattcgcaatga--at----ttgactatgatattaaaaatcttagagttgagcagtttgttattgtt 291  Q
    ||||||||| |||| ||||||||| ||||| ||||||| |||| |  ||    ||||||| ||| |||| ||||||||||||||||| ||||||||||||    
T  29895233 tgtgtatttcagtgacactcttaactggttagctattcacaatcacaatggcattgactacgattttaagaatcttagagttgagcaatttgttattgtt 29895332  T
Q  292 tc 293  Q
    ||    
T  29895333 tc 29895334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 29899039 - 29899103
Alignment:
Q  102 aattctaagtataggtcataatgtttggagacagattcaaagtttccccgttgttcctcttcatt 166  Q
    |||||| ||| | ||| |||||||||||||| | ||| |||||||||| ||||||||||||||||    
T  29899039 aattctcagttttggtgataatgtttggagagatattgaaagtttcccagttgttcctcttcatt 29899103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 233
Target Start/End: Original strand, 29881020 - 29881055
Alignment:
Q  198 tgtgtatttgagtggcactcttaattggttggctat 233  Q
    ||||||||||||||||||| ||||||||||||||||    
T  29881020 tgtgtatttgagtggcactattaattggttggctat 29881055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 29867085 - 29867127
Alignment:
Q  271 gttgagcagtttgttattgtttcattcgatttggggactgaga 313  Q
    ||||| |||||||||||||||||| | ||||||||||||||||    
T  29867085 gttgaccagtttgttattgtttcacttgatttggggactgaga 29867127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 29899145 - 29899183
Alignment:
Q  202 tatttgagtggcactcttaattggttggctattcgcaat 240  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  29899145 tatttgagtggcactcttaattggttagctattcacaat 29899183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 29881102 - 29881147
Alignment:
Q  271 gttgagcagtttgttattgtttcattcgatttggggactgagacat 316  Q
    ||||| || ||||||||||||||| | |||||||||||||||||||    
T  29881102 gttgaccaatttgttattgtttcacttgatttggggactgagacat 29881147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 20058339 - 20058307
Alignment:
Q  198 tgtgtatttgagtggcactcttaattggttggc 230  Q
    ||||||||||||||||||| |||||||||||||    
T  20058339 tgtgtatttgagtggcactgttaattggttggc 20058307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 29454488 - 29454440
Alignment:
Q  119 ataatgtttggagacagattcaaagtttccccgttgttcctcttcattt 167  Q
    |||||||||||||| | ||| |||||||||| |||| ||||||||||||    
T  29454488 ataatgtttggagagatattgaaagtttccctgttgctcctcttcattt 29454440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 114; Significance: 9e-58; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 136 - 357
Target Start/End: Complemental strand, 14089 - 13868
Alignment:
Q  136 attcaaagtttccccgttgttcctcttcatttctacttaggtggaaaagctgtgcatgattctgtgtatttgagtggcactcttaattggttggctattc 235  Q
    |||||||||||||| ||||||||| | |||| ||| || |||| ||| | ||||||| || |||||||||||||| |||||||||||||||||||| |||    
T  14089 attcaaagtttccctgttgttcctgtccattcctatttcggtgaaaatgatgtgcataatgctgtgtatttgagtagcactcttaattggttggctgttc 13990  T
Q  236 gcaatgaatttgactatgatattaaaaatcttagagttgagcagtttgttattgtttcattcgatttggggactgagacatttagtcggtactgactgcc 335  Q
     |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| | ||||||||||  | || |||| | |||||    
T  13989 acaatgactttgactatgatattaagaatcttaaagttgagcagtttgttattgtttcactcgatttgagaactgagacatacaatcagtaccgtctgcc 13890  T
Q  336 tcgtgattttgatgaaatgcca 357  Q
    |||||||||| |||||||||||    
T  13889 tcgtgattttcatgaaatgcca 13868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 136 - 357
Target Start/End: Complemental strand, 22924 - 22703
Alignment:
Q  136 attcaaagtttccccgttgttcctcttcatttctacttaggtggaaaagctgtgcatgattctgtgtatttgagtggcactcttaattggttggctattc 235  Q
    |||||||||||||| ||||||||| | |||| ||| || |||| ||| | ||||||| || |||||||||||||| |||||||||||||||||||| |||    
T  22924 attcaaagtttccctgttgttcctgtccattcctatttcggtgaaaatgatgtgcataatgctgtgtatttgagtagcactcttaattggttggctgttc 22825  T
Q  236 gcaatgaatttgactatgatattaaaaatcttagagttgagcagtttgttattgtttcattcgatttggggactgagacatttagtcggtactgactgcc 335  Q
     |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| | ||||||||||  | || |||| | |||||    
T  22824 acaatgactttgactatgatattaagaatcttaaagttgagcagtttgttattgtttcactcgatttgagaactgagacatacaatcagtaccgtctgcc 22725  T
Q  336 tcgtgattttgatgaaatgcca 357  Q
    |||||||||| |||||||||||    
T  22724 tcgtgattttcatgaaatgcca 22703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 22128190 - 22128249
Alignment:
Q  124 gtttggagacagattcaaagtttccccgttgttcctcttcatttctacttaggtggaaaa 183  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||| ||| || ||||||    
T  22128190 gtttggagagagattcaaagtttccccgatgttcctcttcatttctcctttggaggaaaa 22128249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 3625580 - 3625625
Alignment:
Q  271 gttgagcagtttgttattgtttcattcgatttggggactgagacat 316  Q
    |||||||| ||||||||||||||| | |||||||||||||||||||    
T  3625580 gttgagcaatttgttattgtttcacttgatttggggactgagacat 3625625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 236
Target Start/End: Complemental strand, 32579162 - 32579124
Alignment:
Q  198 tgtgtatttgagtggcactcttaattggttggctattcg 236  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  32579162 tgtgtatgtgagtggcactattaattggttggctattcg 32579124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 24331196 - 24331159
Alignment:
Q  198 tgtgtatttgagtggcactcttaattggttggctattc 235  Q
    |||||||||||||||| |||||||||||||||||||||    
T  24331196 tgtgtatttgagtggcgctcttaattggttggctattc 24331159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 21855680 - 21855643
Alignment:
Q  198 tgtgtatttgagtggcactcttaattggttggctattc 235  Q
    |||||||||||||||| |||||||||||||||||||||    
T  21855680 tgtgtatttgagtggcgctcttaattggttggctattc 21855643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 4366798 - 4366754
Alignment:
Q  198 tgtgtatttgagtggcactcttaattggttggctattcgcaatga 242  Q
    |||||||||||||||||| ||||||||||| || |||| ||||||    
T  4366798 tgtgtatttgagtggcacgcttaattggttagcaattcacaatga 4366754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 17561137 - 17561089
Alignment:
Q  119 ataatgtttggagacagattcaaagtttccccgttgttcctcttcattt 167  Q
    |||| ||||||||| | |||||||||||||| |||||||||||| ||||    
T  17561137 ataacgtttggagagatattcaaagtttcccggttgttcctcttgattt 17561089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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