View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20515_low_18 (Length: 320)

Name: NF20515_low_18
Description: NF20515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20515_low_18
NF20515_low_18
[»] chr7 (1 HSPs)
chr7 (7-302)||(46894213-46894508)


Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 7 - 302
Target Start/End: Original strand, 46894213 - 46894508
Alignment:
Q  7 attgggtaagcccttttgggccaaaaaggaaggagcacaagagaagaggaaccgagggattgtaaccattgggccgggcttaggcccgttaatggcgtag 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  46894213 attgggtaagcccttttgggccaaaaaggaaggagcacaagagaagaggaactgagggattgtaaccattgggccgggcttaggcccattaatggcgtag 46894312  T
Q  107 atagcgaggacatcttgagccagttcacccatagctgtttgttgagtgaccgggtttgcggacataagcccacaggtgttgttatggcaaccgggtctga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46894313 atagcgaggacatcttgagccagttcacccatagctgtttgttgagtgaccgggtttgcggacataagcccacaggtgttgttatggcaaccgggtctga 46894412  T
Q  207 aagaagagacacacgtgtgacacgtgtgagcattggctctggagcattgggttgaatggcaatagggtgcttggtatgttgaggatgcgtagtgtt 302  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46894413 aagaagagacacacgtgtgacatgtgtgagcattggctctggagcattgggttgaatggcaatagggtgcttggtatgttgaggatgcgtagtgtt 46894508  T

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