View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20515_low_19 (Length: 313)
Name: NF20515_low_19
Description: NF20515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20515_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 8e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 71 - 301
Target Start/End: Original strand, 38161812 - 38162042
Alignment:
| Q |
71 |
gcacaatatatggcatttattaataatcattttatagcaaacttgttcatgtttgtcaatactannnnnnnnnnnnattatataatatattgccaattct |
170 |
Q |
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| T |
38161812 |
gcacaatatatgacatttattaataatcattttatagcaaacttgttcatgtttgtcgatactattttttgtttttattatataatatattgccaattct |
38161911 |
T |
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| Q |
171 |
cttctttgacatttgatactaatataaaagatttcctttcttgttaactaagataaggacattgcacatacttggccattgcatgttactcctataccac |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
38161912 |
cttctttgacatttgatactaatataaaagatttcctttcttgttaactaagataaggccattgcacatacttggccattgcatgttactactataccag |
38162011 |
T |
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| Q |
271 |
taaaagcaaatatctttgcacattttcttct |
301 |
Q |
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||||||||||||||| ||||||||||||||| |
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| T |
38162012 |
taaaagcaaatatctgtgcacattttcttct |
38162042 |
T |
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