View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20515_low_26 (Length: 250)

Name: NF20515_low_26
Description: NF20515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20515_low_26
NF20515_low_26
[»] chr6 (1 HSPs)
chr6 (1-234)||(14748892-14749125)
[»] chr7 (6 HSPs)
chr7 (32-234)||(19779132-19779333)
chr7 (32-234)||(19888050-19888251)
chr7 (33-212)||(19351406-19351584)
chr7 (108-234)||(19357507-19357632)
chr7 (100-200)||(12820270-12820370)
chr7 (111-151)||(20364957-20364997)
[»] chr3 (3 HSPs)
chr3 (32-234)||(32579204-32579405)
chr3 (166-234)||(12735144-12735211)
chr3 (45-154)||(12735232-12735341)
[»] chr2 (3 HSPs)
chr2 (32-200)||(18921108-18921276)
chr2 (32-230)||(18909152-18909349)
chr2 (102-148)||(18913978-18914024)
[»] scaffold0464 (1 HSPs)
scaffold0464 (171-234)||(7724-7786)


Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 14748892 - 14749125
Alignment:
Q  1 gttattcttacacacatgggcatgaagaattttggtttcgtttttggaacccaaccactaacacattatctcaagaattagggcatttaactacgttttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14748892 gttattcttacacacatgggcatgaagaattttggtttcgtttttggaacccaaccactaacacattatctcaagaattagggcatttaactacgttttt 14748991  T
Q  101 taggttaacatttggatatgatatttcaaacgacacttataaggtggtggccttttctatcgatgaggtcaaagttttcagtttaagtgataatgtttgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14748992 taggttaacatttggatatgatatttcaaacgacacttataaggtggtggccttttctatcgatgaggtcaaagttttcagtttaagtgataatgtttgg 14749091  T
Q  201 gagagatattcctacttttcccgttgttcctttt 234  Q
    ||||||||||||||||||||||||||||||||||    
T  14749092 gagagatattcctacttttcccgttgttcctttt 14749125  T

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Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 32 - 234
Target Start/End: Original strand, 19779132 - 19779333
Alignment:
Q  32 ttggtttcgtttttggaacccaaccactaacacattatctcaagaattagggcatttaactacgttttttaggttaacatttggatatgatatttcaaac 131  Q
    |||||||||||||||||||||| |||| |||||||||||| |||| ||||||  |||||  | |||||| ||| |||||||||||||||||||||||||     
T  19779132 ttggtttcgtttttggaacccagccacaaacacattatctgaagatttagggtgtttaaacaagtttttgaggctaacatttggatatgatatttcaaat 19779231  T
Q  132 gacacttataaggtggtggccttttctatcgatgaggtcaaagttttcagtttaagtgataatgtttgggagagatattcctacttttcccgttgttcct 231  Q
    |||||||||||||||||||||||||||  ||| ||||||||| |||||||||| ||||||||| ||| ||||||||||||| | ||||||| ||||||||    
T  19779232 gacacttataaggtggtggccttttctgccgacgaggtcaaaattttcagtttgagtgataatattt-ggagagatattccaagttttcccattgttcct 19779330  T
Q  232 ttt 234  Q
    |||    
T  19779331 ttt 19779333  T

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Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 32 - 234
Target Start/End: Complemental strand, 19888251 - 19888050
Alignment:
Q  32 ttggtttcgtttttggaacccaaccactaacacattatctcaagaattagggcatttaactacgttttttaggttaacatttggatatgatatttcaaac 131  Q
    |||||||||||||||||||||| |||| |||||||||||| |||||||||||  |||||    |||||| |||||||||||||||||||||||||||||     
T  19888251 ttggtttcgtttttggaacccagccacaaacacattatctgaagaattagggtgtttaaacgagtttttcaggttaacatttggatatgatatttcaaat 19888152  T
Q  132 gacacttataaggtggtggccttttctatcgatgaggtcaaagttttcagtttaagtgataatgtttgggagagatattcctacttttcccgttgttcct 231  Q
    |||||||||||||||||||| ||||||   || ||||||||| |||| ||||| ||||||||| ||| ||||||||||||| | ||||||| ||||||||    
T  19888151 gacacttataaggtggtggctttttctgcagacgaggtcaaactttttagtttgagtgataatattt-ggagagatattccgaattttcccattgttcct 19888053  T
Q  232 ttt 234  Q
    |||    
T  19888052 ttt 19888050  T

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Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 212
Target Start/End: Complemental strand, 19351584 - 19351406
Alignment:
Q  33 tggtttcgtttttggaacccaaccactaacacattatctcaagaattagggcatttaactacgttttttaggttaacatttggatatgatatttcaaacg 132  Q
    ||||| ||||| ||||||||| |||| || ||||||||| || || ||||| ||| |||||  ||||||| |||||||||||| |||||||||||||| |    
T  19351584 tggttacgtttctggaacccagccacaaagacattatctgaaaaaatagggtattcaactaaattttttaagttaacatttggctatgatatttcaaatg 19351485  T
Q  133 acacttataaggtggtggccttttctatcgatgaggtcaaagttttcagtttaagtgataatgtttgggagagatattcc 212  Q
    ||||||||||||||||| |||    |  | ||||||| |||||||| ||||| ||||||||||||| |||||||||||||    
T  19351484 acacttataaggtggtgtcctacaatgccaatgaggtgaaagtttttagtttgagtgataatgttt-ggagagatattcc 19351406  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 234
Target Start/End: Original strand, 19357507 - 19357632
Alignment:
Q  108 acatttggatatgatatttcaaacgacacttataaggtggtggccttttctatcgatgaggtcaaagttttcagtttaagtgataatgtttgggagagat 207  Q
    |||||||| |||||||||| ||| |||||||| ||||| |||||||| |||  | |  |||||||  |||||||| | |||||||||| |||| ||||||    
T  19357507 acatttggctatgatattttaaatgacacttacaaggttgtggccttctctgccaacaaggtcaacattttcagtatgagtgataatgcttgg-agagat 19357605  T
Q  208 attcctacttttcccgttgttcctttt 234  Q
    ||||| ||||||||| |||||||||||    
T  19357606 attccaacttttcccattgttcctttt 19357632  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 200
Target Start/End: Complemental strand, 12820370 - 12820270
Alignment:
Q  100 ttaggttaacatttggatatgatatttcaaacgacacttataaggtggtggccttttctatcgatgaggtcaaagttttcagtttaagtgataatgtttg 199  Q
    ||||||| |||||||| ||||||| |||||  |||||||| ||||||||||||||||||  | | ||||| || ||||  |||||| |||||||||||||    
T  12820370 ttaggttcacatttggttatgataattcaactgacacttacaaggtggtggccttttcttccaaagaggtgaaggtttgtagtttacgtgataatgtttg 12820271  T
Q  200 g 200  Q
    |    
T  12820270 g 12820270  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 20364997 - 20364957
Alignment:
Q  111 tttggatatgatatttcaaacgacacttataaggtggtggc 151  Q
    ||||| ||||||| |||||||||||||||||| ||||||||    
T  20364997 tttggttatgataattcaaacgacacttataaagtggtggc 20364957  T

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Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 32 - 234
Target Start/End: Complemental strand, 32579405 - 32579204
Alignment:
Q  32 ttggtttcgtttttggaacccaaccactaacacattatctcaagaattagggcatttaactacgttttttaggttaacatttggatatgatatttcaaac 131  Q
    |||||| ||||||||||||||| ||||||||||||||||||||  |||||||  ||||| || |||||| |||||||| |||||||||||||||||||||    
T  32579405 ttggttacgtttttggaacccagccactaacacattatctcaaatattagggtgtttaaataagtttttcaggttaacgtttggatatgatatttcaaac 32579306  T
Q  132 gacacttataaggtggtggccttttctatcgatgaggtcaaagttttcagtttaagtgataatgtttgggagagatattcctacttttcccgttgttcct 231  Q
    |||  ||||||||||||||| |||||  |  | |||||||||||||| ||||| || |||||||||| ||||||||||||| | |||| |||||||||||    
T  32579305 gacgattataaggtggtggctttttccgtgaacgaggtcaaagtttttagtttgagagataatgttt-ggagagatattccaaatttttccgttgttcct 32579207  T
Q  232 ttt 234  Q
    |||    
T  32579206 ttt 32579204  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 12735211 - 12735144
Alignment:
Q  166 aggtcaaagttttcagtttaagtgataatgtttgggagagatattcctacttttcccgttgttcctttt 234  Q
    |||| ||||||||| | || | ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  12735211 aggtaaaagttttctgcttgactgataatgtttgg-agagatattcctccttttcccgttgttcctttt 12735144  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 12735341 - 12735232
Alignment:
Q  45 tggaacccaaccactaacacattatctcaagaattagggcatttaactacgttttttaggttaacatttggatatgatatttcaaacgacacttataagg 144  Q
    ||||||||| |||| || ||||||||| || |||| ||| ||| |||||   ||||| |||  |||||||| |||||||||||||| ||   ||||||||    
T  12735341 tggaacccagccacaaatacattatctgaaaaattcgggtattcaactaacctttttcggtatacatttggctatgatatttcaaatgatggttataagg 12735242  T
Q  145 tggtggcctt 154  Q
    |||| |||||    
T  12735241 tggttgcctt 12735232  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 200
Target Start/End: Complemental strand, 18921276 - 18921108
Alignment:
Q  32 ttggtttcgtttttggaacccaaccactaacacattatctcaagaattagggcatttaactacgttttttaggttaacatttggatatgatatttcaaac 131  Q
    |||||||||  | ||||||||| |||| ||  |||||||| |  |||||||  ||||||| |  | || ||| ||||||||||| |||||||||||||||    
T  18921276 ttggtttcgaatctggaacccagccacgaatgcattatctgataaattaggttatttaaccaactattctagattaacatttggctatgatatttcaaac 18921177  T
Q  132 gacacttataaggtggtggccttttctatcgatgaggtcaaagttttcagtttaagtgataatgtttgg 200  Q
    || |||||||||||||||| ||| |||    |   ||| |||||||||||||| |||||||||||||||    
T  18921176 gaaacttataaggtggtggacttctctgctaacacggtgaaagttttcagtttgagtgataatgtttgg 18921108  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 230
Target Start/End: Complemental strand, 18909349 - 18909152
Alignment:
Q  32 ttggtttcgtttttggaacccaaccactaacacattatctcaagaattagggcatttaactacgttttttaggttaacatttggatatgatatttcaaac 131  Q
    |||||| ||||| |||||||||  ||| |||||||||||| || |||||||  | ||||| |  | ||| ||||||||||| || |||||||||  |||     
T  18909349 ttggttccgtttatggaacccagtcacgaacacattatctgaaaaattaggtaacttaaccaactatttcaggttaacattcggctatgatattataaat 18909250  T
Q  132 gacacttataaggtggtggccttttctatcgatgaggtcaaagttttcagtttaagtgataatgtttgggagagatattcctacttttcccgttgttcc 230  Q
    |||| ||||||||||||||| || |||    |    || |||||||||||||| || |||||||||| ||||||||||||| | ||||||  |||||||    
T  18909249 gacatttataaggtggtggcattctctgctaacacagtgaaagttttcagtttgagggataatgttt-ggagagatattccaagttttcctattgttcc 18909152  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 18914024 - 18913978
Alignment:
Q  102 aggttaacatttggatatgatatttcaaacgacacttataaggtggt 148  Q
    ||||||||||| || |||||| ||| |||||||||||||||||||||    
T  18914024 aggttaacattcggctatgatgttttaaacgacacttataaggtggt 18913978  T

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Target: scaffold0464 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 7724 - 7786
Alignment:
Q  171 aaagttttcagtttaagtgataatgtttgggagagatattcctacttttcccgttgttcctttt 234  Q
    ||||||||| | || | ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  7724 aaagttttctgcttgactgataatgtttgg-agagatattcctacttttcccattgttcctttt 7786  T

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