View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20515_low_28 (Length: 238)
Name: NF20515_low_28
Description: NF20515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20515_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 5779082 - 5778866
Alignment:
| Q |
5 |
tatcattggcaattttgcgaaggacagcaggaggcaaatattctttcaacatatgacatttgagaacgaaatacttgttatcgtcgctaagcgactcata |
104 |
Q |
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| T |
5779082 |
tatcattggcaattttgcgaaggacagcaggaggcaaatattctttcaacatatgacatttgagaacgaaatacttgttatcgtcgctaagcgactcata |
5778983 |
T |
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| Q |
105 |
tcttttggaaacagtagcatttgtgaatgctttgtcatccggaacaaataccgtggttgaataacgagtgtcaatctcactgtcaatgcggagagaatga |
204 |
Q |
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| T |
5778982 |
tcttttggaaacagtagcatttgcgaatgctttgtcatccggaacaaataccgtggttgaataacgagtgtcaatctcactgtcaatgccgagagaatga |
5778883 |
T |
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| Q |
205 |
aactccgatgctgcttt |
221 |
Q |
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| T |
5778882 |
aactccgaggctgcttt |
5778866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 40 - 221
Target Start/End: Original strand, 5796736 - 5796917
Alignment:
| Q |
40 |
aaatattctttcaacatatgacatttgagaacgaaatacttgttatcgtcgctaagcgactcatatcttttggaaacagtagcatttgtgaatgctttgt |
139 |
Q |
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| T |
5796736 |
aaatattctctcgatacatgacacttgagaacaaaatatttgttattgtcgctaagcgacttgtatcttttggaaacagtagcatctacgaatgctttgt |
5796835 |
T |
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| Q |
140 |
catccggaacaaataccgtggttgaataacgagtgtcaatctcactgtcaatgcggagagaatgaaactccgatgctgcttt |
221 |
Q |
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| T |
5796836 |
tatcagaaacaaataccgtggttggataacgagtgtcaatctcactgtcaatgccgagagaatgaaactccgaggctgcttt |
5796917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 79 - 221
Target Start/End: Complemental strand, 5796736 - 5796594
Alignment:
| Q |
79 |
ttgttatcgtcgctaagcgactcatatcttttggaaacagtagcatttgtgaatgctttgtcatccggaacaaataccgtggttgaataacgagtgtcaa |
178 |
Q |
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| T |
5796736 |
ttgttatcgttgctaagcgagttatatcttttggaaacagaagcatttgcgaatgctttgtcatcaggaacaaatatcgtggttggataacgagtgtcaa |
5796637 |
T |
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| Q |
179 |
tctcactgtcaatgcggagagaatgaaactccgatgctgcttt |
221 |
Q |
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| T |
5796636 |
tatcactgtcaatgccgagagaatgaaactccgaggttgcttt |
5796594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 192
Target Start/End: Complemental strand, 5817322 - 5817171
Alignment:
| Q |
40 |
aaatattctttcaacatatgacatttgagaacgaaatacttgttatcgtcgctaagcgactcatatcttttggaaacagtagcatttgtgaatgctttgt |
139 |
Q |
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| T |
5817322 |
aaatattctctcaatatatgacactcgagaacaaaatacttgttatcgtcactaagcgacttatatcttttagaaacataagcatctgcgaatgctttgt |
5817223 |
T |
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| Q |
140 |
catccggaacaaataccgtggttgaataacgagtgtcaatctcactgtcaatg |
192 |
Q |
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| T |
5817222 |
catcaggaa-aaatattgtaattggatcacgagtgtcaatctcaaggtcaatg |
5817171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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