View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20515_low_4 (Length: 586)
Name: NF20515_low_4
Description: NF20515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20515_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 10 - 568
Target Start/End: Original strand, 28614486 - 28615045
Alignment:
| Q |
10 |
attattctagggacagtaatcccaccaatagaaatacggaaaatagaaactgggagaagcaattttatcgacacaatggtta--tttctcagaaatatga |
107 |
Q |
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| T |
28614486 |
attattctaggaacagtaatcccatcaatagaaatacggaaaatagaaactgggagaagcaattttatcgacacaatggttacctttctcagaaatatga |
28614585 |
T |
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| Q |
108 |
gtttgtatgaaatgcatgtgacaagtaatctccaaataccagtgcaaatggaagaagaaacatgataattaaaaagactagctactctcaaatgtcataa |
207 |
Q |
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| T |
28614586 |
gtttgtatgaaatgcatgtgacaagtaatctccaaataccagtgcaaatggaagaagaaacatgataattaaaaagactagctactctcaaatgtcataa |
28614685 |
T |
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| Q |
208 |
ccccggcacgcaaaagagaagaaatgacttcttagaataggatttagaaagtcccaacaaatctttgaatcggaagcatcattaaccaaccataacaaca |
307 |
Q |
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| T |
28614686 |
ccccggcacgcaaaagagaagaaatgacttcttagaataggttttagaaagtcccaacaaatcttcgaatcggaagcatcattaaccaaccataacaaca |
28614785 |
T |
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| Q |
308 |
agatcaccctacaaaagggaagaacaaactttatgcctcgctgccatcatagcaagcattttcttgctgacaaaaatacacagagaaaaatttgcaattg |
407 |
Q |
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| T |
28614786 |
agatcaccctacaaaagggaagaacaaactttatgcctcgctgccatcatagcaagcattttcttgctgacaagaatacgcagagaaaaatttgcaattg |
28614885 |
T |
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| Q |
408 |
atatgcataaacttttttagttgtccaaagtatcttcgactgaaagtcagagactaattcctctaggcgtgaagattcgtttaaggaattgctctctcca |
507 |
Q |
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| T |
28614886 |
atatgcataaacttttttagttgtccaaagtatcttcgactgaaagtcagagactaattcctctaggcgtgaagattcgtttaaataattgctctctcca |
28614985 |
T |
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| Q |
508 |
ggtaggtgatattctatactcaaacgcataaatataagaatagtgtagctagtaagataat |
568 |
Q |
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| T |
28614986 |
ggtaggtgatattctatactc-aacgcataaatataagaatagtgtagctagtaagataat |
28615045 |
T |
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