View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20515_low_5 (Length: 568)
Name: NF20515_low_5
Description: NF20515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20515_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Original strand, 8299057 - 8299602
Alignment:
| Q |
1 |
attatatgatagtgtaactaagaatggattactatattcttcaatgtcttcatcatgtttgcctgtcaactgaaaaacaacttcaatcaccaaatggcgt |
100 |
Q |
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| T |
8299057 |
attatatgatagtgtaactaagagtggattactatattcttcaatgtcttcatcatgt--gcctgtcaactgaaaaacaacttcaatcaccaaatggcgt |
8299154 |
T |
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| Q |
101 |
gccttacagtcttttaaatccattgacttcacagaaaaaattgaggcagatgtaaacacatcaagataaaatattcacgcaatcaagaatttgaaatttt |
200 |
Q |
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| T |
8299155 |
gccttacagtcttttaaatc------------------aattgaggcagatgtaaacacatgaagataaaatattcacgcaatcaagaatttgaaaattt |
8299236 |
T |
|
| Q |
201 |
ttgattaatttgcatcattgatgtaat---------------tgctgacatggttttgtagttgaagaacgaaatagagtagaatcaagtattacagttt |
285 |
Q |
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| T |
8299237 |
gtgattaatttgcatcattgatgtaataagcaatattccttttgctgaaatggttttgtagttgaagaacgaaatagagtagaatcaagtattacagttt |
8299336 |
T |
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| Q |
286 |
gtatactcatcgaaatttgagaaagaaatcagtgtggtattctatataatgaaaaatatcttcaacaccaaa-tggtgtgacttaaagcctctgagacta |
384 |
Q |
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| T |
8299337 |
gtatactcatcgaaatttgagaaagaaatcagtgtggtattctatataatgaaaaatatcttcaacaccaaaatggtgtgacttaaagcct--gagacta |
8299434 |
T |
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| Q |
385 |
tccattgattccacagaaaaatttgaggc-gaggttaaacatcaagagaaattttcagattcaaacaaacaaataacccaatgtaggaaatgaaattatc |
483 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8299435 |
tccattgattccacagaaaaatttgaggcaggggttaaacatcaagagaaattttcagattcaaacaaacaaataacccaatgtaggaaatgaaattatc |
8299534 |
T |
|
| Q |
484 |
aagggaagttttcagaatgttaaccaacaacgttttcatacattaaattcaaaactttcattaaaaac |
551 |
Q |
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| T |
8299535 |
aagggaagttttcagaatgttaaccaacaaagttttcatacattaaattcaaaactttcattaaaaac |
8299602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 419 - 478
Target Start/End: Original strand, 8308880 - 8308940
Alignment:
| Q |
419 |
taaacatcaa-gagaaattttcagattcaaacaaacaaataacccaatgtaggaaatgaaa |
478 |
Q |
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| T |
8308880 |
taaacatcaaagagaaattttcagattcaatcaaacaaataacccaatgtaggaaatgaaa |
8308940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 335 - 487
Target Start/End: Original strand, 8312332 - 8312486
Alignment:
| Q |
335 |
tgaaaaatatcttcaacaccaaatggtgtgacttaaagcctctgagactatccattgattccacagaaa--aatttgaggcgaggttaaacatcaagaga |
432 |
Q |
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| T |
8312332 |
tgaaaaacatcttcaacactgaatggtttgccttaaaacctcttagactgtccattgattcccaaaaaataaaatcgaagcagagtttaacatcaacaaa |
8312431 |
T |
|
| Q |
433 |
aattttcagattcaaacaaacaaataacccaatgtaggaaatgaaattatcaagg |
487 |
Q |
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|| ||||| |||| |||||||||||||||||||| | |||||||||||||||||| |
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| T |
8312432 |
aaatttcacattcgaacaaacaaataacccaatgcaagaaatgaaattatcaagg |
8312486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 493 - 551
Target Start/End: Original strand, 8312678 - 8312736
Alignment:
| Q |
493 |
tttcagaatgttaaccaacaacgttttcatacattaaattcaaaactttcattaaaaac |
551 |
Q |
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| T |
8312678 |
tttcacaatgttaactaacaaagttttcaaacattaaattccaaactttcattaaaaac |
8312736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 18281951 - 18281905
Alignment:
| Q |
94 |
atggcgtgccttacagtcttttaaatccattgacttcacagaaaaaa |
140 |
Q |
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| T |
18281951 |
atggtgtgccttgaagtcttttaaatccattgacttcacacaaaaaa |
18281905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 30255524 - 30255578
Alignment:
| Q |
1 |
attatatgatagtgtaactaagaatggattac---tatattcttcaatgtcttca |
52 |
Q |
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||||||||||| ||||||||||||| |||||| |||||||| ||||||||||| |
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| T |
30255524 |
attatatgatattgtaactaagaatagattactagtatattctccaatgtcttca |
30255578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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