View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20515_low_8 (Length: 455)
Name: NF20515_low_8
Description: NF20515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20515_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 40562702 - 40562266
Alignment:
| Q |
1 |
atcaaaataactcaacttgagacttatttcattcttctccctcctttctcttcttcaaacaccttcacctcannnnnnnnccaatatggttactacaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
40562702 |
atcaaaataactcaacttgagacttatttcattcttctccctcctttctcttcttcaa---ccttcacctcattttttttccaatatggttactacaact |
40562606 |
T |
|
| Q |
101 |
tcatacgtcacaaatgttaaatccaccgttcatttctcatgcatatcaaatcaacaccgttcccacttaaacaccaagctcaagcccaccacccttagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40562605 |
tcatacgtcacaaatgttaaatccaccgttcatttctcatgcatatcaaatcaacaccgttcccacttaaacaccaagctcaagtccaccacccttagaa |
40562506 |
T |
|
| Q |
201 |
tgagtatgactcaaactccgtattgggcttccttgcatgctgacatagaagctcatctcaaacaaaccattactatcaaagaacccctcgtggtttttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40562505 |
tgagtatgactcaaactccgtattgggcttccttgcatgctgacatagaagctcatctcaaacaaaccattactatcaaagaacccctcgtggtttttga |
40562406 |
T |
|
| Q |
301 |
gcccatgcaccacctcattttcacagctccaaaaacaaccgtgcctgcgttatgcctcgccacatgtgagctcgtcggaggtcaacgccaccaagccata |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40562405 |
gcccatgcaccacctcattttcacagctccaaaaacaaccgtgccggcgttatgcctcgccacatgtgagctcgtcggaggtcaacgccaccaagccata |
40562306 |
T |
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| Q |
401 |
tccgctgcttcaactttgttactaatggaagcagccactt |
440 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |
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| T |
40562305 |
tccgctgcttcagctttgttactaatggaagcagccactt |
40562266 |
T |
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