View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20516_high_1 (Length: 1063)
Name: NF20516_high_1
Description: NF20516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20516_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 785; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 785; E-Value: 0
Query Start/End: Original strand, 169 - 1050
Target Start/End: Complemental strand, 42899912 - 42899010
Alignment:
| Q |
169 |
atataagaaatgaaaagaaaaatatttgattccgaatggtcccttccctttgggaagaatagtgacagtatttcacatacaaaaaggataaaataaagtt |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
42899912 |
atataagaaatgaaaagaaaaatatttgattccgaatggtcccttccctttgggaagaatagtgacagtatttcacgtacaaaaaggataaaataaattt |
42899813 |
T |
|
| Q |
269 |
taaattatgaagacnnnnnnn------------gaaagatatatacaccaaactaattaccttcccatggtttttgggaatggttttcttgatgattgga |
356 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42899812 |
taaattatgaagacaaaaaaaagggcaaaaaaagaaagatatatacaccaaactaattaccttcccatggtttttgggaatggttttcttgatgattgga |
42899713 |
T |
|
| Q |
357 |
gttggaagagttcatgcaacttcccataccagcaatggtgaggatatcactatcagagagtggtttaagacctaagaaatctcttgtaaatgcattgttt |
456 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42899712 |
gttggaagggttcatgcaacttcccataccagcaatggtgaggatatcactatcagagagtggtttaagacctaagaaatctcttgtaaatgcattgttt |
42899613 |
T |
|
| Q |
457 |
cctcca---------tcgtcatcattggtggttgtttttgtaatatcattatcaccatcatgattgatattatgatcttgatttgaatgaagaatatttc |
547 |
Q |
| |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42899612 |
cctccagcggcaacatcgtcatcattggtggttgtttttggaatatcattatcaccatcatgattgatattatgatcttgatttgaatgaagaatatttc |
42899513 |
T |
|
| Q |
548 |
cagcaaaagtatcctcaaaagaagttccatgaaatccagaagaagagaaagagttgtttatcatttggtcttcacatgaggacaaattcaaactaaaatt |
647 |
Q |
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| T |
42899512 |
cagcaaaagtatcctcaaaagaagttccatgaaatccagaagaagagaaagagttgtttatcatttggtcttcacatgaggacaaattcaaactaaaatt |
42899413 |
T |
|
| Q |
648 |
accatttgagtttatcatgttgttggtggcagagtcaacaatagacacgtgaccctgttggtgggtcccactcatcatggactgtgatgagcatgagctg |
747 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42899412 |
accatttgagtttatcatgttgttggtggcagagtcaacaatagacacgtgaccctgttggtgggtcccactcatcatggactgtgatgagcatgagctg |
42899313 |
T |
|
| Q |
748 |
gttgcacccatctgagctgctttctgtaacaatgctgtagctgacatgtgaggtgaagctgcagatgatggttggtaggatggaagtgtaggagtaggac |
847 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42899312 |
gttgcacccatctgagctgctttctgtaacaatgctgtagctgacatgtgaggtgaagctgcagatgatggttggtaggatggaagtgtagaagtaggac |
42899213 |
T |
|
| Q |
848 |
catttctagggttagggttttcataaaggtgtagatcttgatccaaacttgaatagtttgaagagagatcaatggatgattgacaaagccaagagggtat |
947 |
Q |
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| T |
42899212 |
catttctagggttagggttttcataaaggtgtagatcttgatccaaacttgaatagtttgaagagagatcaatggatgattgacaaagccaagagggtat |
42899113 |
T |
|
| Q |
948 |
ttgtacttcttgttctggccttaacatgttgaaactttgatgctctttcttcaatgtgaagccttggatatcttgtgtttggagattgttcatgttgtga |
1047 |
Q |
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| T |
42899112 |
ttgtacttcttgttctggccttaacatgttgaaactttgatgctctttcttcaatgtgaagccttggatatcttgagtttggagattgttcatgttgtga |
42899013 |
T |
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| Q |
1048 |
tga |
1050 |
Q |
| |
|
||| |
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|
| T |
42899012 |
tga |
42899010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 42900994 - 42900836
Alignment:
| Q |
19 |
aaatgtataatcaatatcagagaatgtgtttaataccaaccagctaggtttctatgtacacattaattactcttacttgcatatttgtattacatcacac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42900994 |
aaatgtataatcaatatcagagaatgtgtttaataccaactaggtaggtttctatgtacacattaattactcttacttgcatatttgtattacatcacac |
42900895 |
T |
|
| Q |
119 |
acaccttagaaatattatggtcatgcatgttttgtaaaataacaagatatatataagaa |
177 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42900894 |
acaccttagaaatattatggtcatgcatgttttgtaaaataacaagatatatataagaa |
42900836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 748 - 797
Target Start/End: Original strand, 5787617 - 5787666
Alignment:
| Q |
748 |
gttgcacccatctgagctgctttctgtaacaatgctgtagctgacatgtg |
797 |
Q |
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||||||||||| |||||||||||||| |||||||| |||||||||||||| |
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| T |
5787617 |
gttgcacccatttgagctgctttctgcaacaatgcagtagctgacatgtg |
5787666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 748 - 811
Target Start/End: Complemental strand, 36990900 - 36990837
Alignment:
| Q |
748 |
gttgcacccatctgagctgctttctgtaacaatgctgtagctgacatgtgaggtgaagctgcag |
811 |
Q |
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||||||||||| ||||| ||||| |||| |||||| || ||||||||||||||||||| ||||| |
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| T |
36990900 |
gttgcacccatttgagcagctttttgtagcaatgcagtggctgacatgtgaggtgaagttgcag |
36990837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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