View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20516_low_3 (Length: 310)
Name: NF20516_low_3
Description: NF20516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20516_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 49654786 - 49655069
Alignment:
| Q |
14 |
tgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtgatgttgcannnnnnnn--ctgattttgtttgttctgttataggat |
111 |
Q |
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| T |
49654786 |
tgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtgatgttgcattttttttttctgattttgtttgttctgttataggat |
49654885 |
T |
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| Q |
112 |
agttttgttatggtaattttgtaattgacacaagtttagcttatagtatgtggtttatgtccttagtttagtcggggggctaattttacatttagaagat |
211 |
Q |
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| T |
49654886 |
agttttgttatggtaattttgtaattgacacaagtttagcttatagtatgtggtttatgtccttagtttagtcgggg--ctaattttacatttagaagat |
49654983 |
T |
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| Q |
212 |
cttagtcttaacactggaaatgctctgctcatagctttagcttattttgattttggactaaactgtaaatgatgttctaatagcct |
297 |
Q |
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| T |
49654984 |
cttagtcttaacactggaaatgctctgctcatagctttagcttattttgattttggactaaactgtaaatgatgttctaatagcct |
49655069 |
T |
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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 16486433 - 16486487
Alignment:
| Q |
14 |
tgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtg |
68 |
Q |
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| T |
16486433 |
tgattccctttgggttcttcggtgatgaaaatgcaagtgggtgttctgttatgtg |
16486487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 21816477 - 21816423
Alignment:
| Q |
14 |
tgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtg |
68 |
Q |
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| T |
21816477 |
tgattccctttgggttcttcggtgatgaaaatgcaagtgggtgttctgttatgtg |
21816423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 8551537 - 8551505
Alignment:
| Q |
195 |
ttttacatttagaagatcttagtcttaacactg |
227 |
Q |
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| T |
8551537 |
ttttacatttagaagatcttagtcttgacactg |
8551505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 14381262 - 14381210
Alignment:
| Q |
17 |
ttccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtga |
69 |
Q |
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|||| |||||||| || |||||||||||||||| ||| ||||| ||||||||| |
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| T |
14381262 |
ttccttttgagttatttagtgatgaaaatgcaagtggatgttccattatgtga |
14381210 |
T |
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