View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20517_low_1 (Length: 504)
Name: NF20517_low_1
Description: NF20517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20517_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 50 - 416
Target Start/End: Complemental strand, 1209375 - 1209001
Alignment:
| Q |
50 |
aaaacctaatttgaatcttattacttttgtgagcatttacttgccaagaagtgtttagcaaagtccatcatgttcattttatttttgagagttctcannn |
149 |
Q |
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| T |
1209375 |
aaaacctaatttgagtcttattacttttgtgagcatttacttgccaagaagtgtttagcaaagtccatcatgttcattttatttttgagagttctcattt |
1209276 |
T |
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| Q |
150 |
nnnn-cctcttgagaggaagttcatgttctcatgagtcttatttcttaattagtatatttagcaagtgttacatagtagtatataaccaccgtcaat--- |
245 |
Q |
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| T |
1209275 |
tttttcctcttgagaggaagtccatgttctcatgagtcttatttcttaattagtatatttagcaagtgttacatagtagtatataaccactgtcaatcgt |
1209176 |
T |
|
| Q |
246 |
-ataagactaattatcgttgtctgcaatagaacattcgaattttttatacataaaatctagctgagtctcgtgttaacaatgtttttattctaagcatcg |
344 |
Q |
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| T |
1209175 |
tataagactaattatcgttgtctgcaatagaacattcgaattttttatacataaaatctagctgagtctcgtgttaacaatgtttttattctaagcatcg |
1209076 |
T |
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| Q |
345 |
atcaatctttaagctagtaaaaacactaatttagtgctt---taaaatgtttgttggtcatgttacattctagtt |
416 |
Q |
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| T |
1209075 |
atcaatctttaagctagtaaaaacactaatttagtgctttaataaaatgtttgttggtcatattacattctagtt |
1209001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 416 - 493
Target Start/End: Complemental strand, 1208933 - 1208856
Alignment:
| Q |
416 |
tagtttaaccaatcaaagaactcccttattgtgtgtaggtctaacctatgagttgttcattgctttgatccttttcat |
493 |
Q |
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| T |
1208933 |
tagttgaaccaatcaaagaactcctttattgtgtgtaggtctaacctatgatgtgttcattgctttgatccttttcat |
1208856 |
T |
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