View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20517_low_2 (Length: 403)
Name: NF20517_low_2
Description: NF20517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20517_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 9198829 - 9199003
Alignment:
| Q |
1 |
atttttcccaatatttcgtataatcccataaacaatcttaaaatcaaagaatacaattgaagttgtcttatcaaatctcttannnnnnnagcacatcaaa |
100 |
Q |
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| T |
9198829 |
atttttcccaatatttcttacaatcc-ataaacaatcttaaaatgaaagaatacaattgaagttgtcttgtcaaatctcttatttttt-agcacatcaaa |
9198926 |
T |
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| Q |
101 |
gatggccgtactctcaatatttgggttgtagcttacacatctagttgcttcattggcactttaaagtccggttatgg |
177 |
Q |
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| T |
9198927 |
catggccgaactctcaatatttgggttgtagcttacacatctaattgcttcattggcactttaaagttcggttatgg |
9199003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 257 - 366
Target Start/End: Original strand, 9199083 - 9199187
Alignment:
| Q |
257 |
gtccatcacgaagaagcataaactctaaatattctctgcgaaatggttaatcagattaacttaatctaatctaatctaatataataaaatcctcgtggtt |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9199083 |
gtccatcacgaagaagcataaactctaaatattctctgcgaaatggttaatcagattaact-----taatctaatctaatataataaaatcctcgtggtt |
9199177 |
T |
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| Q |
357 |
attttctatg |
366 |
Q |
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|||||||||| |
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| T |
9199178 |
attttctatg |
9199187 |
T |
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