View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20517_low_4 (Length: 291)
Name: NF20517_low_4
Description: NF20517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20517_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 274
Target Start/End: Original strand, 27413338 - 27413596
Alignment:
| Q |
10 |
attattctgctaatataacgggcctcatcctatggtccctgtggctgttaggatatccttatcttaagaattgaatggttaatactgagtagtttatatg |
109 |
Q |
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| T |
27413338 |
attattctgctaatataacgggcctcattctatggttcctgt------taggatatccttatcttaagaattgaatggttattactgagtagtttatatg |
27413431 |
T |
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| Q |
110 |
agtgataacagctgaagaaacatcacatggtgttgtcttatagattttcacaatagtcacaatagattttagaataatgacagatgagtttgtaatgtat |
209 |
Q |
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| T |
27413432 |
agtgataacagctgaagaaccatcacatggtgttgtcttatagattttcacaatagtcacaatagattttagaataatgacagatgagtttgtaacgtag |
27413531 |
T |
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| Q |
210 |
ttattgctcgaataatggccatatatataagtttaggtgagttgggtcctgaggatcattaaggt |
274 |
Q |
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| T |
27413532 |
ttattgctcgaataatggccatatatataagtttaggtgagttgggtcctgaggatcactaaggt |
27413596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 27420937 - 27420993
Alignment:
| Q |
133 |
cacatggtgttgtcttatagattttca-caatagtcacaatagattttagaataatg |
188 |
Q |
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| T |
27420937 |
cacatggtgttgtcttatagattttcatcaagagacacaagagattttagaataatg |
27420993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 27416334 - 27416375
Alignment:
| Q |
54 |
ctgttaggatatccttatcttaagaattgaatggttaatact |
95 |
Q |
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| T |
27416334 |
ctgttaggatatccttatctaaagaattgaatggttagtact |
27416375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 27569502 - 27569461
Alignment:
| Q |
54 |
ctgttaggatatccttatcttaagaattgaatggttaatact |
95 |
Q |
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| T |
27569502 |
ctgttaggatatccttatctaaagaattgaatggttactact |
27569461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 27569406 - 27569350
Alignment:
| Q |
133 |
cacatggtgttgtcttatagattttca-caatagtcacaatagattttagaataatg |
188 |
Q |
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|||||||| ||||||| |||||||||| ||| |||||||| |||||||||||||||| |
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| T |
27569406 |
cacatggttttgtcttgtagattttcatcaagagtcacaagagattttagaataatg |
27569350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 27420874 - 27420906
Alignment:
| Q |
54 |
ctgttaggatatccttatcttaagaattgaatg |
86 |
Q |
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| T |
27420874 |
ctgttaggatatccttatctaaagaattgaatg |
27420906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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