View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20517_low_5 (Length: 244)

Name: NF20517_low_5
Description: NF20517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20517_low_5
NF20517_low_5
[»] chr5 (2 HSPs)
chr5 (1-230)||(9198585-9198814)
chr5 (98-129)||(18873184-18873215)
[»] chr3 (16 HSPs)
chr3 (137-202)||(32034165-32034230)
chr3 (150-202)||(19984629-19984681)
chr3 (98-137)||(19984641-19984680)
chr3 (98-137)||(32034166-32034205)
chr3 (98-137)||(42637733-42637772)
chr3 (137-203)||(40926527-40926593)
chr3 (156-202)||(42637727-42637773)
chr3 (137-202)||(26926981-26927046)
chr3 (150-203)||(32516175-32516228)
chr3 (97-137)||(26927166-26927206)
chr3 (102-138)||(39268871-39268907)
chr3 (98-137)||(26926982-26927021)
chr3 (98-137)||(32516187-32516226)
chr3 (98-129)||(39269128-39269159)
chr3 (98-137)||(40926529-40926568)
chr3 (137-202)||(40926855-40926920)
[»] chr7 (9 HSPs)
chr7 (137-195)||(38948378-38948436)
chr7 (137-202)||(5266184-5266249)
chr7 (137-202)||(33834024-33834089)
chr7 (98-137)||(33834025-33834064)
chr7 (98-129)||(38948403-38948434)
chr7 (99-137)||(5266185-5266223)
chr7 (137-195)||(16564976-16565034)
chr7 (137-195)||(16600628-16600686)
chr7 (98-127)||(5266445-5266474)
[»] chr8 (5 HSPs)
chr8 (137-202)||(25186598-25186663)
chr8 (98-137)||(25186599-25186638)
chr8 (98-137)||(41456312-41456351)
chr8 (98-137)||(43901007-43901046)
chr8 (137-202)||(15968029-15968094)
[»] chr6 (4 HSPs)
chr6 (137-202)||(5592623-5592688)
chr6 (98-137)||(5592648-5592687)
chr6 (137-197)||(8929925-8929985)
chr6 (163-203)||(28985641-28985681)
[»] chr1 (9 HSPs)
chr1 (137-202)||(7171604-7171669)
chr1 (98-137)||(47086111-47086150)
chr1 (137-202)||(6238302-6238367)
chr1 (98-137)||(6237958-6237997)
chr1 (98-137)||(7171605-7171644)
chr1 (137-203)||(38871119-38871186)
chr1 (163-202)||(47086112-47086151)
chr1 (98-137)||(47377913-47377952)
chr1 (102-139)||(4112779-4112816)
[»] chr4 (6 HSPs)
chr4 (137-202)||(3640280-3640346)
chr4 (98-137)||(41743611-41743650)
chr4 (137-202)||(14115710-14115775)
chr4 (98-127)||(14945229-14945258)
chr4 (137-202)||(45684354-45684419)
chr4 (98-134)||(53684018-53684054)
[»] chr2 (3 HSPs)
chr2 (98-129)||(4722106-4722137)
chr2 (98-137)||(10485269-10485308)
chr2 (101-137)||(18607246-18607282)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 9198585 - 9198814
Alignment:
Q  1 ttttgtttgcgtcagagataaagttgataacgagttacactttcaagttcaaaatgatagtttgtctctattttttgtccactcttaccctttttcgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  9198585 ttttgtttgcgtcagagataaagttgataacgagttacacttttaagtttaaaatgatggtttgtctctattatttgtccactcttaccctttttcgtaa 9198684  T
Q  101 tgaaattggaggtctaactcatccttaaataccggtttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| ||| |||||||||||||||| ||||||||||||||| |    
T  9198685 tgaaattggaggtctaactcatccttaaataccggtttgaattcaacaggctcttataccataataaaatttgaggtctaacgcatccttaaaaaccgat 9198784  T
Q  201 tctaaatcggaagaaaagtcttatctatcc 230  Q
    ||||||||||||||| ||||||||||||||    
T  9198785 tctaaatcggaagaagagtcttatctatcc 9198814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 129
Target Start/End: Original strand, 18873184 - 18873215
Alignment:
Q  98 taatgaaattggaggtctaactcatccttaaa 129  Q
    ||||||||||||||||||||||||||||||||    
T  18873184 taatgaaattggaggtctaactcatccttaaa 18873215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 32034230 - 32034165
Alignment:
Q  137 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 202  Q
    ||||| |||| ||||||| |||||| ||||||||| |||||||||| |||||||||||||||||||    
T  32034230 ttgaaatcgacaagctctgataccataatgaaattggaggtctaactcatccttaaaaaccggttc 32034165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 19984629 - 19984681
Alignment:
Q  150 gctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 202  Q
    ||||| |||||| ||||||||| |||||||||| |||||||||||||||||||    
T  19984629 gctctgataccataatgaaattggaggtctaactcatccttaaaaaccggttc 19984681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 19984641 - 19984680
Alignment:
Q  98 taatgaaattggaggtctaactcatccttaaataccggtt 137  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  19984641 taatgaaattggaggtctaactcatccttaaaaaccggtt 19984680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 32034205 - 32034166
Alignment:
Q  98 taatgaaattggaggtctaactcatccttaaataccggtt 137  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  32034205 taatgaaattggaggtctaactcatccttaaaaaccggtt 32034166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 42637733 - 42637772
Alignment:
Q  98 taatgaaattggaggtctaactcatccttaaataccggtt 137  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  42637733 taatgaaattggaggtctaactcatccttaaaaaccggtt 42637772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 40926593 - 40926527
Alignment:
Q  137 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttct 203  Q
    ||||| |||| | ||||| |||||| ||||||||| |||| ||||| ||||||||||||||||||||    
T  40926593 ttgaaatcgacaggctctaataccataatgaaattggaggcctaactcatccttaaaaaccggttct 40926527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 42637727 - 42637773
Alignment:
Q  156 ataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 202  Q
    |||||| ||||||||| |||||||||| |||||||||||||||||||    
T  42637727 ataccataatgaaattggaggtctaactcatccttaaaaaccggttc 42637773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 26927046 - 26926981
Alignment:
Q  137 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 202  Q
    |||||| ||| | ||||| |||||| ||||||||| |||| ||||| |||||||||||||||||||    
T  26927046 ttgaatccgacaggctctgataccataatgaaattggaggcctaactcatccttaaaaaccggttc 26926981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 32516175 - 32516228
Alignment:
Q  150 gctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttct 203  Q
    ||||| |||||| ||||||||| |||| ||||| ||||||||||||||||||||    
T  32516175 gctctgataccataatgaaattggaggcctaactcatccttaaaaaccggttct 32516228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 26927206 - 26927166
Alignment:
Q  97 gtaatgaaattggaggtctaactcatccttaaataccggtt 137  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  26927206 gtaatgaaattggaggcctaactcatccttaaaaaccggtt 26927166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 39268871 - 39268907
Alignment:
Q  102 gaaattggaggtctaactcatccttaaataccggttt 138  Q
    |||||||||||||||||||||||||||| ||||||||    
T  39268871 gaaattggaggtctaactcatccttaaaaaccggttt 39268907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 26927021 - 26926982
Alignment:
Q  98 taatgaaattggaggtctaactcatccttaaataccggtt 137  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  26927021 taatgaaattggaggcctaactcatccttaaaaaccggtt 26926982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 32516187 - 32516226
Alignment:
Q  98 taatgaaattggaggtctaactcatccttaaataccggtt 137  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  32516187 taatgaaattggaggcctaactcatccttaaaaaccggtt 32516226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 129
Target Start/End: Complemental strand, 39269159 - 39269128
Alignment:
Q  98 taatgaaattggaggtctaactcatccttaaa 129  Q
    ||||||||||||||||||||||||||||||||    
T  39269159 taatgaaattggaggtctaactcatccttaaa 39269128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 40926568 - 40926529
Alignment:
Q  98 taatgaaattggaggtctaactcatccttaaataccggtt 137  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  40926568 taatgaaattggaggcctaactcatccttaaaaaccggtt 40926529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 40926920 - 40926855
Alignment:
Q  137 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 202  Q
    ||||| |||| | ||||| |||||| |||||||||  ||| ||||| |||||||||||||||||||    
T  40926920 ttgaaatcgacaggctctgataccataatgaaattgaaggactaactcatccttaaaaaccggttc 40926855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 38948378 - 38948436
Alignment:
Q  137 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaa 195  Q
    |||||||||| ||||||| |||||| ||||||||| |||||||||| ||||||||||||    
T  38948378 ttgaattcgacaagctctgataccataatgaaattggaggtctaactcatccttaaaaa 38948436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 5266249 - 5266184
Alignment:
Q  137 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 202  Q
    |||||||||| | ||||| |||||| ||||||||| |||| ||||| |||||||||||||||||||    
T  5266249 ttgaattcgacaggctctgataccagaatgaaattggaggcctaactcatccttaaaaaccggttc 5266184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 33834089 - 33834024
Alignment:
Q  137 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 202  Q
    ||||| |||| | ||||| |||||| ||||||||| |||| ||||| |||||||||||||||||||    
T  33834089 ttgaaatcgacaggctctgataccataatgaaattggaggcctaactcatccttaaaaaccggttc 33834024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 33834064 - 33834025
Alignment:
Q  98 taatgaaattggaggtctaactcatccttaaataccggtt 137  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  33834064 taatgaaattggaggcctaactcatccttaaaaaccggtt 33834025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 129
Target Start/End: Original strand, 38948403 - 38948434
Alignment:
Q  98 taatgaaattggaggtctaactcatccttaaa 129  Q
    ||||||||||||||||||||||||||||||||    
T  38948403 taatgaaattggaggtctaactcatccttaaa 38948434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 5266223 - 5266185
Alignment:
Q  99 aatgaaattggaggtctaactcatccttaaataccggtt 137  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  5266223 aatgaaattggaggcctaactcatccttaaaaaccggtt 5266185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 16565034 - 16564976
Alignment:
Q  137 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaa 195  Q
    |||||||||||||||||| ||||||   |||||||| ||| ||||| ||||||||||||    
T  16565034 ttgaattcgataagctctgataccatgttgaaatttaaggcctaactcatccttaaaaa 16564976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 16600628 - 16600686
Alignment:
Q  137 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaa 195  Q
    |||||||||||||||||| ||||||   |||||||| ||| ||||| ||||||||||||    
T  16600628 ttgaattcgataagctctgataccatgttgaaatttaaggcctaactcatccttaaaaa 16600686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 127
Target Start/End: Complemental strand, 5266474 - 5266445
Alignment:
Q  98 taatgaaattggaggtctaactcatcctta 127  Q
    ||||||||||||||||||||||||||||||    
T  5266474 taatgaaattggaggtctaactcatcctta 5266445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 25186663 - 25186598
Alignment:
Q  137 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 202  Q
    |||||||||| | ||||| |||||| ||||||||| |||| ||||| |||||||||||||||||||    
T  25186663 ttgaattcgacaggctctgataccataatgaaattggaggcctaactcatccttaaaaaccggttc 25186598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 25186638 - 25186599
Alignment:
Q  98 taatgaaattggaggtctaactcatccttaaataccggtt 137  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  25186638 taatgaaattggaggcctaactcatccttaaaaaccggtt 25186599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 41456312 - 41456351
Alignment:
Q  98 taatgaaattggaggtctaactcatccttaaataccggtt 137  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  41456312 taatgaaattggaggcctaactcatccttaaaaaccggtt 41456351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 43901007 - 43901046
Alignment:
Q  98 taatgaaattggaggtctaactcatccttaaataccggtt 137  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  43901007 taatgaaattggaggcctaactcatccttaaaaaccggtt 43901046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 15968029 - 15968094
Alignment:
Q  137 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 202  Q
    ||||| |||| | ||||| |||||| ||||||||| | || ||||| |||||||||||||||||||    
T  15968029 ttgaaatcgacaggctctgataccataatgaaattggcggcctaactcatccttaaaaaccggttc 15968094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 5592623 - 5592688
Alignment:
Q  137 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 202  Q
    |||||||||| |  |||| |||||| ||||||||| |||||||||| |||||||||||||||||||    
T  5592623 ttgaattcgacagactctgataccataatgaaattggaggtctaactcatccttaaaaaccggttc 5592688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 5592648 - 5592687
Alignment:
Q  98 taatgaaattggaggtctaactcatccttaaataccggtt 137  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  5592648 taatgaaattggaggtctaactcatccttaaaaaccggtt 5592687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 8929985 - 8929925
Alignment:
Q  137 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaacc 197  Q
    |||||||||| ||||||| ||||||   |||||||||||||||||  |||||||| |||||    
T  8929985 ttgaattcgacaagctctgataccatgttgaaatttgaggtctaattcatccttacaaacc 8929925  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 28985641 - 28985681
Alignment:
Q  163 aatgaaatttgaggtctaacacatccttaaaaaccggttct 203  Q
    ||||||||| | |||||||| ||||||||||||||||||||    
T  28985641 aatgaaattgggggtctaacccatccttaaaaaccggttct 28985681  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 7171669 - 7171604
Alignment:
Q  137 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 202  Q
    |||||||||| | ||||| |||||| ||||||||| |||| ||||| |||||||||||||||||||    
T  7171669 ttgaattcgacaggctctgataccataatgaaattggaggcctaactcatccttaaaaaccggttc 7171604  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 47086111 - 47086150
Alignment:
Q  98 taatgaaattggaggtctaactcatccttaaataccggtt 137  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  47086111 taatgaaattggaggtctaactcatccttaaaaaccggtt 47086150  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 6238302 - 6238367
Alignment:
Q  137 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 202  Q
    |||||||||| | ||||| |||||| ||||||||| ||||  |||| |||||||||||||||||||    
T  6238302 ttgaattcgacaggctctgataccataatgaaattggaggcataactcatccttaaaaaccggttc 6238367  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 6237958 - 6237997
Alignment:
Q  98 taatgaaattggaggtctaactcatccttaaataccggtt 137  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  6237958 taatgaaattggaggcctaactcatccttaaaaaccggtt 6237997  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 7171644 - 7171605
Alignment:
Q  98 taatgaaattggaggtctaactcatccttaaataccggtt 137  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  7171644 taatgaaattggaggcctaactcatccttaaaaaccggtt 7171605  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 38871119 - 38871186
Alignment:
Q  137 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatcctta-aaaaccggttct 203  Q
    |||||||||| ||||||| ||||||   |||||||||||| ||||| |||||||| ||||||||||||    
T  38871119 ttgaattcgacaagctctgataccatgttgaaatttgaggcctaacgcatccttacaaaaccggttct 38871186  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 47086112 - 47086151
Alignment:
Q  163 aatgaaatttgaggtctaacacatccttaaaaaccggttc 202  Q
    ||||||||| |||||||||| |||||||||||||||||||    
T  47086112 aatgaaattggaggtctaactcatccttaaaaaccggttc 47086151  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 47377952 - 47377913
Alignment:
Q  98 taatgaaattggaggtctaactcatccttaaataccggtt 137  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  47377952 taatgaaattggaggtctaattcatccttaaaaaccggtt 47377913  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 4112779 - 4112816
Alignment:
Q  102 gaaattggaggtctaactcatccttaaataccggtttg 139  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  4112779 gaaattggaggcctaactcatccttaaaaaccggtttg 4112816  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 3640346 - 3640280
Alignment:
Q  137 ttgaattcgataag-ctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 202  Q
    |||||||||| ||| |||| |||||| ||||||||| |||| ||||| |||||||||||||||||||    
T  3640346 ttgaattcgacaaggctctgataccataatgaaattagaggcctaactcatccttaaaaaccggttc 3640280  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 41743650 - 41743611
Alignment:
Q  98 taatgaaattggaggtctaactcatccttaaataccggtt 137  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  41743650 taatgaaattggaggcctaactcatccttaaaaaccggtt 41743611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 14115710 - 14115775
Alignment:
Q  137 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 202  Q
    ||||| |||| | ||||| |||||| ||||||||| |||| | ||| |||||||||||||||||||    
T  14115710 ttgaaatcgacaggctctgataccataatgaaattggaggcccaactcatccttaaaaaccggttc 14115775  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 127
Target Start/End: Complemental strand, 14945258 - 14945229
Alignment:
Q  98 taatgaaattggaggtctaactcatcctta 127  Q
    ||||||||||||||||||||||||||||||    
T  14945258 taatgaaattggaggtctaactcatcctta 14945229  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 45684354 - 45684419
Alignment:
Q  137 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 202  Q
    ||||| |||| | ||||| |||||| ||||||||| |||| ||||| ||||||||||||| |||||    
T  45684354 ttgaaatcgacacgctctgataccataatgaaattggaggcctaactcatccttaaaaactggttc 45684419  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 53684018 - 53684054
Alignment:
Q  98 taatgaaattggaggtctaactcatccttaaataccg 134  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  53684018 taatgaaattggaggcctaactcatccttaaaaaccg 53684054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 129
Target Start/End: Complemental strand, 4722137 - 4722106
Alignment:
Q  98 taatgaaattggaggtctaactcatccttaaa 129  Q
    ||||||||||||||||||||||||||||||||    
T  4722137 taatgaaattggaggtctaactcatccttaaa 4722106  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 10485308 - 10485269
Alignment:
Q  98 taatgaaattggaggtctaactcatccttaaataccggtt 137  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  10485308 taatgaaattggaggcctaactcatccttaaaaaccggtt 10485269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 18607246 - 18607282
Alignment:
Q  101 tgaaattggaggtctaactcatccttaaataccggtt 137  Q
    |||||||||||| |||||||||||||||| |||||||    
T  18607246 tgaaattggaggcctaactcatccttaaaaaccggtt 18607282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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