View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20518_high_3 (Length: 637)
Name: NF20518_high_3
Description: NF20518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20518_high_3 |
 | |
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| [»] scaffold0221 (2 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 619; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 1 - 627
Target Start/End: Original strand, 14457603 - 14458229
Alignment:
| Q |
1 |
ttccaacttggtttggggaaggtttaccatttcttagaattcttgttttgaggtctaatgcattttttggtgaattaccacctgagctttcaaagctacg |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14457603 |
ttccaacttggtttggggaaggttttccatttcttagaattcttgttttgaggtctaatgcattttttggtgaattaccacctgagctttcaaagctacg |
14457702 |
T |
|
| Q |
101 |
ttcattacaagtgcttgaccttgctaaaaatgaatttaccggcagcattccagctagtttgggtgatctgaaagcaatagcccaagtggagaagaaaaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14457703 |
ttcattacaagtgcttgaccttgctaaaaatgaatttaccggcagcattccagctagtttgggtgatctgagagcaatagcccaagtggagaagaaaaat |
14457802 |
T |
|
| Q |
201 |
aaatatttactgtatggaaaatttgaagaacactactatgaagaaagcttggatgtgtctacgaaagaccaaatgttaacgtataccacgactctttccc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14457803 |
aaatatttactgtatggaaaatttgaagaacactactatgaagaaagcttggatgtgtctacgaaagaccaaatgttaacgtataccacgactctttccc |
14457902 |
T |
|
| Q |
301 |
ttgttactagcatagacctttctgataacaacttcactgggaatattcccaatgaaataacaaaactatccggtttagttgttctcaacttgtcaagaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14457903 |
ttgttactagcatagacctttctgataacaacttcactgggaatattcccaatgaaataacaaaactatccggtttagttgttctcaacttgtcaagaaa |
14458002 |
T |
|
| Q |
401 |
ccatataactggccaaattcacgaaaccatgtcaaatctgcttcaattatcatctcttgatctctcaaacaaccaactttctggaccaattccttcaagc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14458003 |
ccatataactggccaaattcacgaaaccatgtcaaatctgcttcaattatcatctcttgatctctcaaacaaccaactttctggaccaattccttcaagc |
14458102 |
T |
|
| Q |
501 |
ttgtcttccttgtcatttttggggtccctagatttgtccaataataacctgtctggtgtcattccttatacaggccatatgacaacttttgaagctatca |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14458103 |
ttgtcttccttgtcatttttggggtccctagatttgtccaataataacctgtctggtgtcattccttatacaggccatatgacaacttttgaagctatca |
14458202 |
T |
|
| Q |
601 |
ctttttctgggaatcctagtctctgtg |
627 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
14458203 |
ctttttctgggaatcctagtctctgtg |
14458229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 634
Target Start/End: Complemental strand, 14493747 - 14493114
Alignment:
| Q |
1 |
ttccaacttggtttggggaaggtttaccatttcttagaattcttgttttgaggtctaatgcattttttggtgaattaccacctgagctttcaaagctacg |
100 |
Q |
| |
|
||||||||||||||||||||||||| || | |||||||||||| ||||||||||||||||||||| ||| ||||| ||| |||| ||||||| ||| | |
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|
| T |
14493747 |
ttccaacttggtttggggaaggttttccttatcttagaattctcattttgaggtctaatgcattttatggagaattgtcacttgagttttcaaaactagg |
14493648 |
T |
|
| Q |
101 |
ttcattacaagtgcttgaccttgctaaaaatgaatttaccggcagcattccagctagtttgggtgatctgaaagcaatagcccaagtggagaagaaaaat |
200 |
Q |
| |
|
||| || ||||| ||||||||||||| |||||| || | ||||| |||||| | || |||| |||| | |||||||||||| ||||| |||||||||| |
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|
| T |
14493647 |
ttctttgcaagtccttgaccttgctagaaatgacttgagtggcagaattccaacaagcttggctgatttaaaagcaatagccgaagtgcggaagaaaaat |
14493548 |
T |
|
| Q |
201 |
aaatatttactgtatggaaaatttgaagaacactactatgaagaaagcttggatgtgtctacgaaagaccaaatgttaacgtataccacgactctttccc |
300 |
Q |
| |
|
||||| ||| |||||||| ||| | | || || ||||||||| | ||| |||| | | |||| |||||||| ||| ||||||| ||| ||||||| |
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|
| T |
14493547 |
aaatacttattgtatggagaatatcgtggtcattattatgaagaaggattgaatgtctatgtgaaaaaccaaatgctaaaatataccaagaccctttccc |
14493448 |
T |
|
| Q |
301 |
ttgttactagcatagacctttctgataacaacttcactgggaatattcccaatgaaataacaaaactatccggtttagttgttctcaacttgtcaagaaa |
400 |
Q |
| |
|
||||||| ||||||||||||||| |||| ||||||| ||| |||||||| ||||| ||||||||||||| ||||| || |||||||||||||||||||| |
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|
| T |
14493447 |
ttgttacaagcatagacctttctaataataacttcagtggaaatattccaaatgagataacaaaactatttggtttggtggttctcaacttgtcaagaaa |
14493348 |
T |
|
| Q |
401 |
ccatataactggccaaattcacgaaaccatgtcaaatctgcttcaattatcatctcttgatctctcaaacaaccaactttctggaccaattccttcaagc |
500 |
Q |
| |
|
|||||||| ||| ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |
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|
| T |
14493347 |
ccatataagtggtcaaattcctaaaaccatttcaaatctgcttcaattatcatcccttgatctctcaaacaaccaactttccggaacaattccttcaagc |
14493248 |
T |
|
| Q |
501 |
ttgtcttccttgtcatttttggggtccctagatttgtccaataataacctgtctggtgtcattccttatacaggccatatgacaacttttgaagctatca |
600 |
Q |
| |
|
|||||||||||||||||||| |||||| | ||||||||| |||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||| | |
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|
| T |
14493247 |
ttgtcttccttgtcatttttagggtccttggatttgtccgataacaacctctcgggtgtcattccatatacaggccatatgacaacttttgaagctatga |
14493148 |
T |
|
| Q |
601 |
ctttttctgggaatcctagtctctgtgctcctcc |
634 |
Q |
| |
|
||||||| ||||| | ||||||||| |||||| |
|
|
| T |
14493147 |
ctttttcgaggaattcgggtctctgtggtcctcc |
14493114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 1 - 634
Target Start/End: Complemental strand, 14469329 - 14468696
Alignment:
| Q |
1 |
ttccaacttggtttggggaaggtttaccatttcttagaattcttgttttgaggtctaatgcattttttggtgaattaccacctgagctttcaaagctacg |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||| |||||||| |||||| | |||||||| ||| | |
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|
| T |
14469329 |
ttccaacttggtttggggaaggttttccatttctaagaattcttgttttgaggtctaatgaattttccggtgaattgccacctaatctttcaaaactagg |
14469230 |
T |
|
| Q |
101 |
ttcattacaagtgcttgaccttgctaaaaatgaatttaccggcagcattccagctagtttgggtgatctgaaagcaatagcccaagtggagaagaaaaat |
200 |
Q |
| |
|
||| | ||||| | |||||| | |||||||| || || || ||||||||| | || || |||||| ||||||| |||||||||| ||||||||||| |
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|
| T |
14469229 |
ctcactgcaagtcatcgacctttccaaaaatgacttcactggaagcattccaacaagctttggtgatttgaaagctatagcccaagcacagaagaaaaat |
14469130 |
T |
|
| Q |
201 |
aaatatttactgtatggaaaatttgaagaacactactatgaagaaagcttggatgtgtctacgaaagaccaaatgttaacgtataccacgactctttccc |
300 |
Q |
| |
|
||||| ||||| |||||| | | |||||| |||||||| ||||||| ||| |||||| || ||||||| || || |||||||| ||||||||||| |
|
|
| T |
14469129 |
aaatacttactctatggagattctgaagatcactactacaaagaaagtttgaatgtgtatataaaagaccgaagagtagagtataccaagactctttccc |
14469030 |
T |
|
| Q |
301 |
ttgttactagcatagacctttctgataacaacttcactgggaatattcccaatgaaataacaaaactatccggtttagttgttctcaacttgtcaagaaa |
400 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||| |
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|
| T |
14469029 |
ttgttactggcatagacctttctcataacaacttcattggaaatattcccaatgaaataacaaaactatctggtttgatgattctcaacttgtcaagaaa |
14468930 |
T |
|
| Q |
401 |
ccatataactggccaaattcacgaaaccatgtcaaatctgcttcaattatcatctcttgatctctcaaacaaccaactttctggaccaattccttcaagc |
500 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||| |||| || ||||||||||||||| | ||||| ||||||||| ||||||| ||| |
|
|
| T |
14468929 |
ccatataactggcaaaattcctgaaaccatgtcaaatctgcatcaactagaatctcttgatctctcgagcaaccgactttctggtaagattcctttaagt |
14468830 |
T |
|
| Q |
501 |
ttgtcttccttgtcatttttggggtccctagatttgtccaataataacctgtctggtgtcattccttatacaggccatatgacaacttttgaagctatca |
600 |
Q |
| |
|
||| |||||||||||||||||||| |||| | |||||| | || ||||| |||||||||||||| |||||||| |||||||| ||||| || |||| |
|
|
| T |
14468829 |
ttgccttccttgtcatttttggggggcctaaacttgtcccacaacaaccttcagggtgtcattccttacacaggccaaatgacaacctttgatgc-atca |
14468731 |
T |
|
| Q |
601 |
-ctttttctgggaatcctagtctctgtgctcctcc |
634 |
Q |
| |
|
||||| |||||||||| ||||| |||| |||||| |
|
|
| T |
14468730 |
gcttttactgggaatccgagtctttgtggtcctcc |
14468696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 468 - 549
Target Start/End: Original strand, 10164 - 10245
Alignment:
| Q |
468 |
aacaaccaactttctggaccaattccttcaagcttgtcttccttgtcatttttggggtccctagatttgtccaataataacc |
549 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10164 |
aacaaccaactttctggaacaattccttcaagcttgtcttccttgtcatttttggggtccctagatttgtccaataataacc |
10245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 10109 - 10164
Alignment:
| Q |
159 |
ttgggtgatctgaaagcaatagcccaagtggagaagaaaaataaatatttactgta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
10109 |
ttgggtgatctgaaagcaatagcccaagtgcagaagaaaaataaatacttactgta |
10164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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