View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20518_high_7 (Length: 272)
Name: NF20518_high_7
Description: NF20518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20518_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 42594462 - 42594209
Alignment:
| Q |
1 |
atcttttaccaagggtatgtttgtcatggtagaactggtgaagagtgttgactctagagcaagaaagagtttgaatatgataaatacactcccctgcttg |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42594462 |
atctttcaccaagggtatgtttgtcatggtagaactagtgaagagtgttgactctagagcaagaaagagtttgaatatgataaatacactcccctgcttg |
42594363 |
T |
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| Q |
101 |
gtgtaagaaaaatggagaagagggaatccactgcaaccagatcttatattttcacaattttactatcctcttagctcttgtgttttcccaccccacacgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42594362 |
gtgtaagaaaaatggagaagagggaatccactgcaaccagatcttatattttcacaattttactatcctcttagctcttgtgttttcccaccccacacgt |
42594263 |
T |
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| Q |
201 |
tcaagtaaaagtttaaatatatagatgagcacacaaaagagagggggatcactg |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42594262 |
tcaagtaaaagtttaaatatatagatgagcacacaaaagagagggggatcactg |
42594209 |
T |
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