View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20518_high_9 (Length: 250)
Name: NF20518_high_9
Description: NF20518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20518_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 10419909 - 10419831
Alignment:
| Q |
162 |
tacattttgaccattttcacaaaatagttcaaaatgctaagttaaactatttctatcaaaattttgacagtgtcctttg |
240 |
Q |
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| T |
10419909 |
tacattttgaccattttcacaaaatagttcaaaatgctaagttaaactatttctatcaaaatttttacagtgtcctttg |
10419831 |
T |
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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 10419957 - 10419900
Alignment:
| Q |
95 |
acctttaaagttaacaaaataagtcacataaatatctattcccacaaatacattttga |
152 |
Q |
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| T |
10419957 |
acctttaaagttaataaaataattcacataaatatctattcccacaaatacattttga |
10419900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 10344365 - 10344324
Alignment:
| Q |
19 |
aaactatttttaaagacattttcgtcaaaccttatcaaagaa |
60 |
Q |
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| T |
10344365 |
aaactatttttaaagatatttccgtcaaaccgtatcaaagaa |
10344324 |
T |
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