View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20518_low_11 (Length: 249)
Name: NF20518_low_11
Description: NF20518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20518_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 52449365 - 52449601
Alignment:
| Q |
13 |
aaaatctattactgcagcgaatccctcgtcaagcgtgccaccaacatcgctagacctaacctcgtttcactcggaacgtgtatcggaaaatacacacacg |
112 |
Q |
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| T |
52449365 |
aaaatctattactgcagcgaatccctcgtcaagcgtgccaccaacatcgctagacctaacctcgtttcactcggaacgtgtatcggaaaatacacacacg |
52449464 |
T |
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| Q |
113 |
gtggaaattttcatctcaccgttcaggcgctgaatttacttgctgcgaatgccaagcataaggtatggcttaaaccacaatctgagatgtcgtttttgta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52449465 |
gtggaaattttcatctcaccgttcaggcgctgaatttacttgctgcgaatgccaagcataaggtatggcttaaaccacaatctgagatgtcgtttttgta |
52449564 |
T |
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| Q |
213 |
tgggaatcatgtgttgaagagtgcgttgggtcggatt |
249 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
52449565 |
tgggaatcatgtgttgaagagtgcgttgggtcggatt |
52449601 |
T |
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