View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20518_low_13 (Length: 238)
Name: NF20518_low_13
Description: NF20518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20518_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 7470764 - 7470630
Alignment:
| Q |
18 |
attatttcttctggaaattcggccaaacttggcctgatattctgcaaccattatcaacaacttcatgtattaagaccatgtttgagtaaacaactcaaag |
117 |
Q |
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| T |
7470764 |
attatttcttctggaaattcagccaaacttggcctgatattctgcaaccattatcaacagcttcatgtattaagaccatgtttgagtaaacaactcaaag |
7470665 |
T |
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| Q |
118 |
tacttatagtataaaaactatttctacgacaaaag |
152 |
Q |
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| T |
7470664 |
tacttatagtataaaaactatttctacgacaaaag |
7470630 |
T |
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Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 7470602 - 7470514
Alignment:
| Q |
150 |
aagttataagcatgtcttggagggcttacgaaaataagttgaaaataacttatagatatgccataagcagttttcttaaaccttcccaa |
238 |
Q |
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| T |
7470602 |
aagttataagcatgtcttggagggcttacgaaaataagttgaaaataacttatagatatgccataagcagttttcttaaaccttcccaa |
7470514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 29768671 - 29768627
Alignment:
| Q |
180 |
aaaataagttgaaaataacttatagatatgccataagcagttttc |
224 |
Q |
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| T |
29768671 |
aaaataagttgaaaatagcttatagacatgtcataagccgttttc |
29768627 |
T |
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