View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20518_low_2 (Length: 736)
Name: NF20518_low_2
Description: NF20518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20518_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 121 - 731
Target Start/End: Complemental strand, 36300370 - 36299760
Alignment:
| Q |
121 |
cttactttcttaaatattatgttgggttaattatatggtgttagagattgccatattcttgaacggcttttaggacatcaatgatcatcaaattaaagca |
220 |
Q |
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| T |
36300370 |
cttactttattaaatattatgttgggttaattatatggggttagagattgccatattcttgaacggcttttaggacatcaatgatcatcaaattaaagca |
36300271 |
T |
|
| Q |
221 |
ttgaaataaaatttgtggctggttttcctagtctctcttcatttgcatcattgctctcttatacttcttatgtaacaagttattattactactatgaatt |
320 |
Q |
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| T |
36300270 |
ttgaaataaaatttgtggctggttttcctagtctctcttcatttgcatcattgctctcttatacttcttatgtaacaagttattattactactatgaatt |
36300171 |
T |
|
| Q |
321 |
atgcagaagggtatggttttagttcaatggatggaggagaaaggaagaattttaatagggaagggatgggaggtaagcaattatgttagattcaaccatg |
420 |
Q |
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| T |
36300170 |
atgcagaagggtatggttttagttcaattgatggaggagaaaggaagaattttaatagggaagggatgggaggtaagcaattatgttagattcaaccatg |
36300071 |
T |
|
| Q |
421 |
ggagaatattttaacagcaagaacgtgatttttaannnnnnnnnnnnactcttattctatttaaaatgacattgaataaaacaacatttaagatctccgt |
520 |
Q |
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| T |
36300070 |
ggagaata-tttaacagcaagaacgtgatttttaa--ttatttttttactcttattctatttaaaatgacattgaataaaacaacatttaagatctccgt |
36299974 |
T |
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| Q |
521 |
gagcttaaacactccannnnnnncacatttaaaatttggaagttttaaccactagattactt---gaagnnnnnnntaattaagctgt-nnnnnnnntac |
616 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| ||| |
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| T |
36299973 |
gagcttaaacactccatttttttcgcatttaaaatttggaagttttaatcactagattacttgaagaagaaaaaaataattaagctgtaaaaaaaaatac |
36299874 |
T |
|
| Q |
617 |
atttaggtttaaaatattttcccttcaaaaccttctcatcttagagtaattttgctcctcctctcatagtttctatcgagccaaacacatcataaagatg |
716 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36299873 |
atttaggttt-aaatattttcccttcaaaaccttctcatcttagaggaattttgctcctcctctcatagtttctatcgagccaaacacatcataaagatg |
36299775 |
T |
|
| Q |
717 |
caacttatatctgtg |
731 |
Q |
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| T |
36299774 |
caacttatatctgtg |
36299760 |
T |
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